Query= MSMg01no510_c19.b1 MSMg01no510_c19.b1 CHROMAT_FILE:
MSMg01no510_c19.b1 PHD_FILE: MSMg01no510_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:41 2005
(614 letters)
>mm_chr2_127631018_127632031
Length = 1014
Score = 673 bits (348), Expect = 0.0
Identities = 461/564 (81%), Gaps = 99/564 (17%)
Strand = Plus / Plus
Query: 1 taaatacatttttaaaaatgggtataatctggcagaagttttcccagacttaaatgaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatacatttttaaaaatgggtataatctggcagaagttttcccagacttaaatgaaag 260
Query: 61 taaaacataccacttaccaagaaagaacttccttatcaaattctaaacaaggagtgaaag 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 taaaacataccacttaccaagaaagaacttccttatcaaattctaaacgaggagtgaaag 320
Query: 121 agccctgatgcctcagtatactgagatgtgtggccttgggtcctggcctttccattacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctgatgcctcagtatactgagatgtgtggccttgggtcctggcctttccattacct 380
Query: 181 acagtacttcctacgtgcaattgttgaggtaccaggaagaacatatagacatctgtaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtacttcctacgtgcaattgttgaggtaccaggaagaacatatagacatctgtaaag 440
Query: 241 ctttttggtttatgtgcatattttataggacaataaaaaaagtaaagcaaggccaggcag 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttttggaaaatgtgcatattttataggacaataaaaaaagtaaagcaaggccaggcag 500
Query: 301 t----------------------------------------------------------- 301
|
Sbjct: 501 tggtggtgcacgcctttaatcccagcagtgagtttcaagacagccagggctatatagaga 560
Query: 302 ----------------------------------------aaatatctgtaatagtttag 321
||||||||||||||||||||
Sbjct: 561 aactgtctggcgtgcgcaggggggggggggataaatgcataaatatctgtaatagtttag 620
Query: 322 aatagtcaggtctattttgcattttagaagtttttgactttgggggttgtgagctgccca 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatagtcaggtctattttgcattttagaagtttttgactttgggggttgtgagctgccca 680
Query: 382 acatgggtgctgtaaaccaaaatgaggtatcctgaaagtgttcttaacctctgaatatct 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatgggtgctgtaaaccaaaatgaggtatcctgaaagtgttcttaacctctgaatatct 740
Query: 442 ctatacaggagcacgtgtattttt 465
||||||||||||||||||||||||
Sbjct: 741 ctatacaggagcacgtgtattttt 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_c19.g1 MSMg01no510_c19.g1 CHROMAT_FILE:
MSMg01no510_c19.g1 PHD_FILE: MSMg01no510_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:41 2005
(576 letters)
>mm_chr2_127744051_127745025
Length = 975
Score = 1060 bits (548), Expect = 0.0
Identities = 569/576 (98%), Gaps = 1/576 (0%)
Strand = Plus / Minus
Query: 1 caggctaataaggattaggattcatgcccctggcctggaagcccacagaggcttctgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 caggctaataaggattaggattcatgcccctggcctggaagcccacagaggcttctgagt 716
Query: 61 atgtatcagatgtgtgtgaggaagatccccttgttagtaagcagagaacccttggagaca 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 atgtatcagatctgtgtgaggaagatccccttgttagtaagcagagaacccttggagaca 656
Query: 121 accctgtgagtctggtgatgtcatgcaatgagcaggtttaaggttagatgaaaaggtccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 accctgtgagtctggtgatgtcatgcaatgagcaggtttaaggttagatgaaaaggtccc 596
Query: 181 tttataagaaggccactaacaagagaggagatgagggattgcagggggtagaagatacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tttataagaaggccactaacaagagaggagatgagggattgcagggggtagaagatacac 536
Query: 241 ctgaatgtgtttctactctgaagagtgcttgtcactctcaaggcagagccccaggcccat 300
||||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 535 ctgaaggtgtatctaccctgaagagtgcttgtcactctcgaggcagagccccaggcccat 476
Query: 301 gctgagttctaccatgaaataccaacaacataacccacagctctcaaaacactaagtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gctgagttctaccatgaaataccaacaacataacccacagctctcaaaacactaagtaaa 416
Query: 361 aacacatgatttggacactccatgaagatctgcagtctgcccccttgagaataatatttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aacacatgatttggacactccatgaagatctgcagtctgcccccttgagaataatatttt 356
Query: 421 gtaggggggttataacaaaaaaatgcaaccttctaaagatagcttgacttttaagattct 480
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtagggaggttataacaaaaaa-tgcaaccttctaaagatagcttgacttttaagattct 297
Query: 481 accatcagagttgaataattcttggcaactcttttgtataaatctggtcagagccttact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 accatcagagttgaataattcttggcaactcttttgtataaatctggtcagagccttact 237
Query: 541 gtgaagtttgagaaagagacagataaagcagccagc 576
||||||||||||||||||||||||||||||||||||
Sbjct: 236 gtgaagtttgagaaagagacagataaagcagccagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
