BAC Information

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BAC

Clone NameMSMg01-510F14
Chromosome2 (Build37)
Map Location 111,407,503 - 111,408,147
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295
Downstream geneLOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510F14.T7 (MSMg01no510_f14.b1)MSMg01-510F14.TJ (MSMg01no510_f14.g1)
ACCAG583806AG583807
length742742
length of high quality
(start - end)		692 (51 - 742)658 (76 - 733)
definitionCHROMAT_FILE: MSMg01no510_f14.b1 PHD_FILE: MSMg01no510_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:55 2005CHROMAT_FILE: MSMg01no510_f14.g1 PHD_FILE: MSMg01no510_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAAATCCG
CGGAATTCATGGATTTCCCATACTGGAGACTAGAAAGGTCTGATTCGCAT
GTGTATATTTTCTTCTGTATCTTTACTATATGTTAATACATTAACTATGT
AACATCTTTTTAAGCTATTGTAGTACATGGCTCCATTTTTTTGCTAACAT
TTAAGTTATCACCTGAAGGCAAAACATTGTGAGTATCATCATTAAAACAA
CTGATAAACGATGGTCACCAGAATGTGTCACAAAGCAGACATAGCATATT
TTACATCCATAGATGTATAATCTAATAGTGTGCTATGTTCATAGTACTAG
AGGAGAGAATATACAAGGGATTGCATGAGACTTTGTTCTACTTTTCAATG
AAAAGGATAGTCTGACACAGCTTTGGGAAGAAGTGTACTTGCTTTCTTAA
ATAGTAATTCTTTTCATTTGAGGCACAGTTCTATCATCACTTTCTAAACT
TGTGCAGAACAAACATAGTAACAGAAAAGGTGATAAAGAGCACAAGGGAA
AGTGCAATAAGTCTCATCGCTACACAAAGAAGAAAGGTAACAAAGATATG
CTGAGGGCTGGAGAAATTGTCTTACTCAGAACAAGCAATTAAATATATTA
TTCAATATTAAATGATCTGTCCTTTCAACTTGTATATACAAGTGACATTA
TGGAGACTGATCAAGTTATACTTTAGAATAAATATGTATATG

GACAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCAT
GAATGGGTGTTGGATTTTTCAAATGCTTTCTCCACATCTAACGAAATGAT
CATGTGGTTTTTTTCTTTGAGTTTGTTTATATAGTGAATTACGTTGATGA
ATTTCCATATATTAAATTATCCCTGCATCCCTGGAATGAAACCTACTTGG
TCAGGATGAATGATTGTTTTCATGTGTTCTTGGATTCGGTTAACAAGAAT
GTTATTGAGTATTTTTGTTTCGATATTCATAAAGGAAATTCGTCTGAAGT
TTTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCACAGTAATTGTG
GCTTCATAAAATAAGTTAGGTAGAGTACCTTCTGCTTTTATTTTGTGGAA
TAATTTGTGAAGAACTGCAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTA
ATGACTGCTTCTATTTCTTTAGGGGTATAGGACCCTATAGATCATTATCC
TGACCCTGATTTAACTTTGGTATGTGGTATCTGTCTAGAAACTTGTCCAT
TTCATCTAGGTTCTCCAGTTTTGTTGAGTATAGTTTTTTATAGAAGAATC
TGATGGTGTTTTGGATTTCTTCAGGATCTCTTGGTATGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_f14.b1 MSMg01no510_f14.b1 CHROMAT_FILE:
MSMg01no510_f14.b1 PHD_FILE: MSMg01no510_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:55 2005
         (692 letters)



>mm_chr2_111407238_111408329
          Length = 1092

 Score = 1154 bits (597), Expect = 0.0
 Identities = 641/673 (95%), Gaps = 28/673 (4%)
 Strand = Plus / Minus

                                                                       
Query: 20  atactggagactagaaaggtctgattcgcatgtgtatattttcttctgtatctttactat 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 atactggagactagaaaggtctgattcgcatgtgtatattttcttctgtatctttactat 851

                                                                       
Query: 80  atgttaatacattaactatgtaacatctttttaagctattgtagtacatggctccatttt 139
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 850 atattaatacattaactatgtaacatctttttaagctattgtagtacatggctcca-ttt 792

                                                                       
Query: 140 tttgctaacatttaagttatcacctgaaggcaaaacattgtgagtatcatcattaaaaca 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tttgctaacatttaagttatcacctgaaggcaaaacattgtgagtatcatcattaaaaca 732

                                                                       
Query: 200 actgataaacgatggtcaccagaatgtgtcacaaagcagacatagcatattttacatcca 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 actgataaacgatggtcaccagaatgtgtcacaaagcagacatagcatattttacatcca 672

                                                                       
Query: 260 tagatgtataatctaatagtgtgctatgttcatagtactagaggagagaatatacaaggg 319
           ||||||||||||| |||||||||||||||||||||||                       
Sbjct: 671 tagatgtataatccaatagtgtgctatgttcatagta----------------------- 635

                                                                       
Query: 320 attgcatgagactttgttctacttttcaatgaaaaggatagtctgacacagctttgggaa 379
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ----catgagactttgttctacttttcaatgaaaaggatagtctgacacagctttgggaa 579

                                                                       
Query: 380 gaagtgtacttgctttcttaaatagtaattcttttcatttgaggcacagttctatcatca 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaagtgtacttgctttcttaaatagtaattcttttcatttgaggcacagttctatcatca 519

                                                                       
Query: 440 ctttctaaacttgtgcagaacaaacatagtaacagaaaaggtgataaagagcacaaggga 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ctttctaaacttgtgcagaacaaacatagtaacagaaaaggtgataaagagcacaaggga 459

                                                                       
Query: 500 aagtgcaataagtctcatcgctacacaaagaagaaaggtaacaaagatatgctgagggct 559
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aagtgcaataagtctcatccctacacaaagaagaaaggtaacaaagatatgctgagggct 399

                                                                       
Query: 560 ggagaaattgtcttactcagaacaagcaattaaatatattattcaatattaaatgatctg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 398 ggagaaattgtcttactcagaacaagcaattaaatatattattcaatattaaatgatttg 339

                                                                       
Query: 620 tcctttcaacttgtatatacaagtgacattatggagactgatcaagttatactttagaat 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcctttcaacttgtatatacaagtgacattatggagactgatcaagttatactttagaat 279

                        
Query: 680 aaatatgtatatg 692
           |||||||||||||
Sbjct: 278 aaatatgtatatg 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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