BAC Information

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BAC

Clone NameMSMg01-510F19
Chromosome2 (Build37)
Map Location 85,125,602 - 85,126,021
singlet/doubletsinglet
Overlap genenone
Upstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55
Downstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510F19.T7 (MSMg01no510_f19.b1)MSMg01-510F19.TJ (MSMg01no510_f19.g1)
ACCAG583816AG583817
length757759
length of high quality
(start - end)
439 (317 - 755)249 (327 - 575)
definitionCHROMAT_FILE: MSMg01no510_f19.b1 PHD_FILE: MSMg01no510_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:56 2005CHROMAT_FILE: MSMg01no510_f19.g1 PHD_FILE: MSMg01no510_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGCGGA
ATTCTCAGATCTTCTCTCCTTCCTGGTGATCCCTGGGAAATTCTTCTTTA
TATTGTATTGTCTTAACAGTCCCAGCAAAAATAACAAACTTTGGTACCAT
GAGATCATCTCCTTCCTCAAAAGTCCAAAACTACCTAGTCTGAATTTCAT
TGGCCCAGTTATATGTCCATCCCTAAACCAATCACTGTAGCTGGAAAGAA
GCAATATTTATATAAACAGAAAGTGGAAATGGGTGGGAATCXXXXXXXXX
XXXXXXXXXXXXXXXXAAAGATCTGCAAAGGCATAAATCATGAAATTTCA
GCAAACTAAAGTTTATAAACATCTATGAAATTCTCAGAAGAATATGAAAT
TCTCCTAGGAAGAATTATGGGTTGTAATGACAAACAACAGATTCAATTAA
ACAGGATTGGTTTACTCAAACAGAAAGTAAATTTTCTACTGTATTCCAAT
TTGGTAAAAAAAAAAAAAAATTTAAAAATAAAATAGAGGCTAGGAATAAG
ATGTAGGAGGCATGAGGCAGAGAAATCCAGCCAAGATTCTGTCTGTGTTC
TACCAGCCAAAGAACAGACAACAGAGATATCTTCATGGCCTCTGCATATG
GACAGGAGATGAGGCTGTGCCTTCCAACTCCCACCCTCTCACTCCCTCAT
CCCCCTACCCTCACCCCAACTTAGAATCGTTCCCAAAGAAATAGGGTGCC
TAATGTN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATGTGTGCATGAACGACAGAGATG
AGTCTCTCAATGGGAGGATGGGAAAGGCTGTCCCATAGTGTAACTTGAGA
GGTTGTGCTTCTGTAGTGGGAAGTGGCACCTGTCTTTAATCCCAGCACTC
CTGAGGCAGGGGCAGGTGGATCTCTGGGAATTTGAAGCCACCTTATTTTC
CAAAGCAAATTCCAGACCAGCCAAGATGCTTTAAGGATTAAATAAAATAT
TTCCTATTTCATTTATTTATTGTTTATGCATGTGTGTGTGTGTGTGTGTG
TGTGTGTATGGTCACACACATTTATAACATACAAGGGCCACAGCACAAGC
ATGGAGGTCAGATAACAAGTTGCAGGAGTCAGCTCTCTCTTTCCACCATG
TGGGTCCTGGGGACCAAATTCAGGTTGCCAGGTTTGGCAGCAAGTGCCTT
TACCTTCTAAGCCATCTCACTGGCTCTTTTCTAGACTCTTATGCCTACAG
GTTGGAGGAAGCTGCTTCTTGTAGTGTAGTTGTGAGTGGGTTAGGGTCCT
TTCTGATCTAGTGAAATATTTTCATAAAGCATTATCTCAACTTAAGAGAT
CACAGCATACTTAGGCTTTACAAATGGATGCTTTAAAGTGACACGGAAAG
TTATTTCTTATGGGTACCTAGAGGCAGATGTCTTTCAAGATCAAAGCTCT
TCCTAGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_f19.b1 MSMg01no510_f19.b1 CHROMAT_FILE:
MSMg01no510_f19.b1 PHD_FILE: MSMg01no510_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:56 2005
         (439 letters)



>mm_chr2_85125183_85126021
          Length = 839

 Score =  754 bits (390), Expect = 0.0
 Identities = 407/420 (96%), Gaps = 12/420 (2%)
 Strand = Plus / Minus

                                                                       
Query: 32  tcagcaaactaaagtttataaacatctatgaaattctcagaagaatatgaaattctccta 91
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tcagcaaactgaagtttataaacatctatgaaattctcagaagaatatgaaattctccta 780

                                                                       
Query: 92  ggaagaattatgggttgtaatgacaaacaacagattcaattaaacaggattggtttactc 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ggaagaattatgggttgtaatgacaaacaacagattcaattaaacaggattggtttactc 720

                                                                       
Query: 152 aaacagaaagtaaattttctactgtattccaatttggt------------aaaaaaaaaa 199
           ||||||||||||||||||||||||||||||||||||||            ||||||||||
Sbjct: 719 aaacagaaagtaaattttctactgtattccaatttggtaaaaaaaaaaaaaaaaaaaaaa 660

                                                                       
Query: 200 aaaaatttaaaaataaaatagaggctaggaataagatgtaggaggcatgaggcagagaaa 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaaaatttaaaaataaaatagaggctaggaataagatgtaggaggcatgaggcagagaaa 600

                                                                       
Query: 260 tccagccaagattctgtctgtgttctaccagccaaagaacagacaacagagatatcttca 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tccagccaagattctgtctgtgttctaccagccaaagaacagacaacagagatatcttca 540

                                                                       
Query: 320 tggcctctgcatatggacaggagatgaggctgtgccttccaactcccaccctctcactcc 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tggcctctgcatatggacaggagatgaggctgtgccttccaactcccaccctctcactcc 480

                                                                       
Query: 380 ctcatccccctaccctcaccccaacttagaatcgttcccaaagaaatagggtgcctaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ctcatccccctaccctcaccccaacttagaatcgttcccaaagaaatagggtgcctaatg 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)