BAC Information

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BAC

Clone NameMSMg01-510M03
Chromosome2 (Build37)
Map Location 23,823,049 - 23,823,472
singlet/doubletsinglet
Overlap genenone
Upstream geneAbi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1
Downstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510M03.T7 (MSMg01no510_m03.b1)MSMg01-510M03.TJ (MSMg01no510_m03.g1)
ACCAG584119AG584120
length747742
length of high quality
(start - end)
419 (329 - 747)661 (78 - 738)
definitionCHROMAT_FILE: MSMg01no510_m03.b1 PHD_FILE: MSMg01no510_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:25 2005CHROMAT_FILE: MSMg01no510_m03.g1 PHD_FILE: MSMg01no510_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTTTCAAGTTTCAAATATAGTCTGATTTTTAGTGGCATAATAA
GTGCTCTGCTTAGGCATATCAGCAGTGGAGACAAGGTACATTTTTATTGC
TCCTCATATCTCAGAAGAAATTTTCTGTACATCATCTCAAAAGGAACCTC
TCCTTGCCCTATTTCTTTATTATATTCAATTAGCTAAGTGAGTAAAATTC
CAAAGAATTAAAAGGTTCATTTCACTTCTCAAAGTGATCAGTGATTGCCA
AGGGTTTACAAATAAGCAAATATTTTTTGTAAGAAAATTGATTCAAGAAT
TGAAGAATAAAGTCAGCATTGTAACCCTGAAAGTCAGCAACATGGCTGAG
CTTAGCAAGAAAACTCAGTAAAAGAAGAGTAATGGAACACATGCTATATT
AAAGAAGAGACGATTAGGAGGGTGAACGATGAGAAGAAGTGGGACTTAAG
AGGTAAGGGGAGCACAGTGGAGGTAAGGAATGACTAATACCTGTAAATTA
GCATAAATATATAAAATGTTATGATGAAATGCATTTGTCTGTATAATAAT
GATAAACAGTTTTCAATGCAAGCATTATGAAAAACACTAATATTGTACTC
TCACTAATTTTCACATACAATATATTGCTATTAACTATAATCATCAAGTT
GTCTAAGACTTCATTAACTTAGACTTTTACGGTCACTCACATCACTT
TTTACAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTGGAAGATTTTACCTTTGA
TGAGTATTAAGTGCCCCTCATTGTCCTTTTTGATAACTTTGGGTTGAAAG
TCGATTTTATTTGATATTAGAATGGCTACTCCAGCTTGTTTTTTCAGACT
GTTTGCTTGGAAAATTGTTTTCCAGTCTTTCACTCTGAGGTAGTGTCTGT
CTTTTTCCTGAGATGGGTTTCCTGTAAGAAGCAAAATGTTGGGTCCTGTT
TGTGTAGCCATTCTATTAGTCTTTTTATTGGAGAATTGAGTCCATTGATA
TTCAGAGATATTAAGAAAAAGTAATTGTTGCTTCCTATTATTTTTGTTGT
TAGAGTTGGCATTCTGTTCTTGTGGCTGTCTTCTTTTGGGTTTGTTGAAG
GATTACTTTCTTGTTTTTTCTAGGGTTCAGTTTCTGTCCTTGTGTTGGTG
TTTTCCCTTTATTATCCTTTGAAGTCCTGGATTCGTGGAAAGATATTGTG
TGAATTTGGTTTTGTCATGGAATACTTTGGTTTCTCCATCTATGGTAATT
GAGAGTTTTGCTGGATACAGTAGCCTGAGCTGGCATTTGTGTTGTCTTAG
GGTCTGTATAACATCTGTCCAGGATCTTCTGGCTTTCATAGTTTCTGTTG
AGAAGTCTGGAGTAATTCTAATAGGCCTGCCTTTATATGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_m03.b1 MSMg01no510_m03.b1 CHROMAT_FILE:
MSMg01no510_m03.b1 PHD_FILE: MSMg01no510_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:25 2005
         (419 letters)



>mm_chr2_23822849_23823672
          Length = 824

 Score =  766 bits (396), Expect = 0.0
 Identities = 415/424 (97%), Gaps = 5/424 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaagaaaattgattcaagaattgaagaataaagtcagcattgtaaccctgaaagtcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaagaaaattgattcaagaattgaagaataaagtcagcattgtaaccctgaaagtcagc 260

                                                                       
Query: 61  aacatggctgagcttagcaagaaaactcagtaaaagaagagtaatggaacacatgctata 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aacatggctgagcttagcaagaaaactgagtaaaagaagagtaatggaacacatgctata 320

                                                                       
Query: 121 t-----taaagaagagacgattaggagggtgaacgatgagaagaagtgggacttaagagg 175
           |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaagtaaagaagagacgattaggagggtgaacgatgagaagaagtgggacttaagagg 380

                                                                       
Query: 176 taaggggagcacagtggaggtaaggaatgactaatacctgtaaattagcataaatatata 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaggggagcacagtggaggtaaggaatgactaatacctgtaaattagcataaatatata 440

                                                                       
Query: 236 aaatgttatgatgaaatgcatttgtctgtataataatgataaacagttttcaatgcaagc 295
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgttatgatgaaatacatttgtctgtataataatgataaacagttttcaatgcaagc 500

                                                                       
Query: 296 attatgaaaaacactaatattgtactctcactaattttcacatacaatatattgctatta 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatgaaaaacactaatattgtactctcactaattttcacatacaatatattgctatta 560

                                                                       
Query: 356 actataatcatcaagttgtctaagacttcattaacttagacttttacggtcactcacatc 415
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 actataatcatcaagtagtctaagacttcattaacttagacttttacagtcactcacatc 620

               
Query: 416 actt 419
           ||||
Sbjct: 621 actt 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 824
Length adjustment: 9
Effective length of query: 410
Effective length of database: 815
Effective search space:   334150
Effective search space used:   334150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)