BAC Information

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BAC

Clone NameMSMg01-510M07
Chromosome2 (Build37)
Map Location 118,375,410 - 118,375,566
singlet/doubletsinglet
Overlap geneBmf
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859
Downstream geneLOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510M07.T7 (MSMg01no510_m07.b1)MSMg01-510M07.TJ (MSMg01no510_m07.g1)
ACCAG584127AG584128
length732723
length of high quality
(start - end)
320 (330 - 649)157 (422 - 578)
definitionCHROMAT_FILE: MSMg01no510_m07.b1 PHD_FILE: MSMg01no510_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:26 2005CHROMAT_FILE: MSMg01no510_m07.g1 PHD_FILE: MSMg01no510_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGAACTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAAGAGG
GCNGGAATTCAGGGGCTTCCTAATAAATCAATGCTTTCCCAGAGGATCCA
GTTTCAGTCCCTAGTACCCACATGGCCTCTCACCTGTCCCTGGGCATCTG
AGGGCACCAGGCATGCCTGTGATGCAGGGACACACATATAGACAAAACAC
TCATACATATTAAATAAGATTTTTAAAAAGAACTTAAAAGGTTATACACC
AATGTAACAGATAATCCAACCAACAGATGGGTGGATGAACCGAACACACA
GTTCTCAAAAGGAAAAAAGTANATAATTTCAATAAATACATGAAAAGGGG
TGGGGGAGCTAGAGAGGTGACACAGGTGGCTAAGAACATTTGTTGTTCTT
GCAGAAGATCTGATTTAGTCCCCAATACCCACATGGGGTTACAGTTCACC
TTCTTCTAGCCTCTGTGAACATCAGGCACATACACAGTACACATATATAC
ACTCAGCCAAACATTCATATACATAAAATAAAAATACATCTTTAAAGGTA
AATGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAA
TCTACAGATTCACTGCAATCCCCATCAAAATTCCAACTCAATTCTTCAAC
GAATTATAAAGGGCAATCGGCAGATTCATCTGGAATAACAAAAAACCTAG
GATAGCAAAAACTCTTCTCAAGGATAAAAGAA
NCCCGATGATGTGGGAGGCCGGGNGGNGCCCGGTTTCGTATCTGCGTGAA
CTANAGAAGTTTCCCAAACGGCGGANGCNNCCCGAAAGCCCCTCNGGGAG
CAGCAACCACAAATTTGCCCTCAGCACCGCGNNCCCACATCCCTGCACCC
CAACTCCCCTTGGTCACCCCAGATGCCCGCAGTCCAAACCCTTCCCCGGG
CCCCCACGCGCTGCGCGACTCCGCTCCCCACTTCCCGGAGGAGGTTTTAT
CCAACTCCGCCTAGCCCCCCGCCGCCCGGGCGCTCACCGGGCTGCGGTGG
GAGGCGGTGGCTTTTTTTTTGGCAGCGACNGCAGCAGGCGCGAGCNGGCG
CGGGAGTAGGCCACGGCACACCGCGCGGNAGTGGGNCCAAAAAACGCCCG
CTCCGGGCANCCCGCAAACAGCTGATGAGGCCCCGCCCCTCNTTGCGTCA
CTCCAACCACTGACCAATGGCAAGTGGAGGTCCAAGTCTCAAGCTGGGCA
GCTGCCAGGGACAATCACCAATGTACAAACCTTCCCTTGGAAACATTATA
AGGGGCCGGGCGCATTTCTGACCTCCGTCAGAAGCGCAATTGGAGCGCTG
TACAGGGTGAGGATTCGGTTCCTAATGCAAGCCCCAGAAACTATTTATAG
TCTCTAGGTTTTCTACTAGGTAGAGGGGGGACAAGACGCCTAAGTGACTT
TTGTCTACTTGGAAATGGGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_m07.g1 MSMg01no510_m07.g1 CHROMAT_FILE:
MSMg01no510_m07.g1 PHD_FILE: MSMg01no510_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:26 2005
         (157 letters)



>mm_chr2_118375210_118375766
          Length = 557

 Score =  298 bits (154), Expect = 1e-85
 Identities = 156/157 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatgaggccccgcccctcnttgcgtcactccaaccactgaccaatggcaagtggaggt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatgaggccccgcccctctttgcgtcactccaaccactgaccaatggcaagtggaggt 260

                                                                       
Query: 61  ccaagtctcaagctgggcagctgccagggacaatcaccaatgtacaaaccttcccttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagtctcaagctgggcagctgccagggacaatcaccaatgtacaaaccttcccttgga 320

                                                
Query: 121 aacattataaggggccgggcgcatttctgacctccgt 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacattataaggggccgggcgcatttctgacctccgt 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)