BAC Information

Click to search

BAC

Clone NameMSMg01-510O02
Chromosome2 (Build37)
Map Location 134,660,389 - 134,660,589
singlet/doubletsinglet
Overlap genePlcb1
Upstream geneHao1, Txndc13, LOC627897, LOC433478
Downstream geneLOC100043487, LOC100043786, LOC100043788, Plcb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510O02.T7 (MSMg01no510_o02.b1)MSMg01-510O02.TJ (MSMg01no510_o02.g1)
ACCAG584211AG584212
length743736
length of high quality
(start - end)
202 (84 - 285)621 (79 - 699)
definitionCHROMAT_FILE: MSMg01no510_o02.b1 PHD_FILE: MSMg01no510_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:34 2005CHROMAT_FILE: MSMg01no510_o02.g1 PHD_FILE: MSMg01no510_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCCTTCAACCXXXXXXXXXXXXXXXXXXXXXXXXXXNATTATCGACAA
CAGGCGCGGAATCNCNTTATAACAGCAAATCATCTGAGGAGATATTCCAT
TGCCAGTAGAAAGCTGTAGTGAACCGCAAAGTGGACATTTCTTCATCCCA
ATATATTTTGCAAACACTGCATAAAGAGGTCAAGTCGCCCTTGAACCTTT
ACCTGGCTGGGAACTACCCCACCTGCTACTGCCTTTTTAACAGTCTAGGG
CGGTTTCTCTGCAGGTGTGTTTTTCCCTCAAGGAGCGGTTTGGTGTACCT
TTTGGGTACCTATGCTACCCATGTTTATCTCAGCTGGCTAGAGCTGGGAT
GTGCCTTGTGGAAGTCACTCAAAGGTTTCGGAACAACCAACTGAATGGGA
CGGGCCCCCAATTTTGGGGGCCCCAGCCCACCCCAAGGTTAAAAATTAAA
AGGAAGGGGGGGGTAAACTCTGGCATATGGAAAAGGCCCATTAGAATGTT
TTTTTAAAAAAAAATTTAAAAAAGGGGACCTTTAAAAAGGGGTTTGGGTT
TTATTCTCTGGGCCCCGGGAGAAAAAAAAATTTTTTGGGAAAGGAAATTA
AACACCCCTTGAAAATAAAAAATCCCCAGGGGGGGAGAGAGGGGGCCTCC
ATGGGCCTCTTTTTCCAAGAGAAAAACGCCGCGTGCTCCTCCAACAAAAA
AAAATTGTTACACTCCCGGGTGTGTAAAACTATGGGGGTCCCT
NNCCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTCTGTTATTATAAACTTAG
TTCAAAGCCTATAGTTGGTGATATCATGGGCAATGGGGGCAGGGAAACCA
GGCTGCTGTTATTTCAATTAATTCACATGGCATCAAACTGTGTTGTATTT
ATGCTTCTATTCCTTGCAATTCTTGCTATTCTCAGTCTCAGTCAGATTAG
CTTCTCTTTGCAGTGAATGCAGCAACTCCTGGCTTCTTAAAATGCTGAGG
ATAAGCAACTGTTGGGTGCTCTTCACTCCAAGGACCTCTATCCTGTGCCC
TCTAAGGTTCAGAGAGCATCACCCAAGAAGAAACAGAAAGAATGCAGGAG
CTGTATGATGGGGAGGAGGGATGCAAAATGTTGTCTTCTGGGTATGACAC
AGACTTTGCAATGAAAATACTCACAGCAGCTCTTATACACATGGGGGCCT
GCACAAAGCTGGGTCTGGCAACAGTTATGGATGGGAAGGGAATCCTGGGG
GCACTGGTCTCTCAGGAACTACTTACTGGCTACGGGTGAATGCTAAGGAA
GGGTGAATCATTCTCTAAAGTGTGTGTCCACTCGTGAGCCTATCAGGTTC
TACTGGAGAGTTCTGTACTCTTTGCCATATAATGGCCCCCATTAAGCTTA
GTCATCACAAATCAAGAGCACAGGACATGAAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_o02.b1 MSMg01no510_o02.b1 CHROMAT_FILE:
MSMg01no510_o02.b1 PHD_FILE: MSMg01no510_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:34 2005
         (202 letters)



>mm_chr2_134660189_134660789
          Length = 601

 Score =  375 bits (194), Expect = e-109
 Identities = 200/202 (99%), Gaps = 1/202 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaggagatattccattgccagtagaaagctgtagtgaaccgcaaagtggacatttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaggagatattccattgccagtagaaagctgtagtgaaccgcaaagtggacatttctt 260

                                                                       
Query: 61  catcccaatatattttgcaaacactgcataaagaggtcaagtcgcccttgaacctttacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcccaatatattttgcaaacactgcataaagaggtcaagtcgcccttgaacctttacc 320

                                                                       
Query: 121 tggctgggaactaccccacctgctactgcctttttaacagtctagggcggtttctctgca 180
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 321 tggctgggaactaccccacctgctactgcctttt-aacagtctagggtggtttctctgca 379

                                 
Query: 181 ggtgtgtttttccctcaaggag 202
           ||||||||||||||||||||||
Sbjct: 380 ggtgtgtttttccctcaaggag 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 601
Length adjustment: 8
Effective length of query: 194
Effective length of database: 593
Effective search space:   115042
Effective search space used:   115042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)