BAC Information

Click to search

BAC

Clone NameMSMg01-511G08
Chromosome2 (Build37)
Map Location 111,006,000 - 111,006,373
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270
Downstream geneLOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511G08.T7 (MSMg01no511_g08.b1)MSMg01-511G08.TJ (MSMg01no511_g08.g1)
ACCAG584601AG584602
length711743
length of high quality
(start - end)
423 (36 - 458)374 (73 - 446)
definitionCHROMAT_FILE: MSMg01no511_g08.b1 PHD_FILE: MSMg01no511_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:15 2005CHROMAT_FILE: MSMg01no511_g08.g1 PHD_FILE: MSMg01no511_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATATTTTGCGGCGCTATACGACTCTCTATTCCGAGAGGATCCGCGGAA
TTCTTTGTTTACCTCTGTTCACCATTTGTTAATGGGGTTATTTGATTTTC
TGGAGTCCACTTTCTTGAGTTCTTTATATGCATTGGATATTAGTCCACTA
TCGGATTTAGGATAGGTTAAGATCCGTTCCCAATCTGTTGGTGGCCTTTT
AGTCTTATTGACAGTGTCTTTTGTCTTACAGAAGCTTTGCAGTTTCATGA
GGCCCCATTTGTCAATTCTCAGTCTTACAGTACAAGCCATTGCTGTTCTA
TTCAGGAATTTTCCTCCTGTGCCCATATGTTCGAGGCATTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTTTCTGGTTTTATGTGGAATTCCTTGATCC
ACTTAGATTTGACCTTAGCACAAGGAGATAGGAATGGATTAATTTGAATT
CTTCTACATGATAACCGCCAGTTGCGCCAGCACCATTTGTTAAAAATGCT
GTCTTTTTCCCACTGGATGGTCTCAGCTCCCTTGTCGATGATGAAGTGAC
CATAGGTTTGTGGGTTCTTTTCTGGGCCTTCTAATCTATTCTATTGGTCC
GCTCGCCTGTCTCTATACCAGTTTCATGCAGTTTTCCATCCCAATTGCTC
TGTTTTAAAGCTTTAGGTCCCGTATGGTGATTCCACCAGAGGTTCTTTTA
CCCTTGTAAAG
CAATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTTGTTATCTTTTGAATTATTAT
CCAATGGATTTGCTTATAGACTTCTTTAAAATATCCACACAATTGCTATG
CAGACTTTGAATGGAGTGCCAACAGGATATATACAACTTTTGAGTTTGTT
GCAAATGTTAATTTCAGAGCGGCCAAGTCCAAGTTTTAATTTTGAACATA
ATCCCAGATCAGATATTTAGGAAAATATCAACAGCTTGGTAAACACAAAC
TTTCCTTCTAAATCATGCATCTAAAAATTATTTATATCATGTTTGTACAA
CCTGTAATTTCTCTCAATTTAAAGAAATGTCCAACATCCTTAATCATCAG
GAAAATGCAAATCAAAAACAACCCTGAGATTCTACCTCACACCAGTCAGA
ATGGCTAAAATCCAAAACTCAGGTGACAGCAAATGCTGGCCATGATGTGG
AGAAAGAGGAACACTCTTCCATTTGTTGATGGGAATCCAAGCTAATAGAA
CCACTCTGGAAATTAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACT
ACCTGAGGACCCAGCTATACCACTTCCTGGGATGATACCCCAAAGATGCT
CCTACATATTACAAGGATACATACTCCCCCTAGTTTATAGCAGCCTTATT
TATAATACCCCTAACCTTTAAAGAACCCAAATGTCCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_g08.g1 MSMg01no511_g08.g1 CHROMAT_FILE:
MSMg01no511_g08.g1 PHD_FILE: MSMg01no511_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:15 2005
         (374 letters)



>mm_chr2_111005800_111006573
          Length = 774

 Score =  661 bits (342), Expect = 0.0
 Identities = 366/374 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttttgttatcttttgaattattatccaatggatttgcttatagacttctttaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttttgttatcttttgaattattatccaatggatttgcttatagacttctttaaaat 260

                                                                       
Query: 61  atccacacaattgctatgcagactttgaatggagtgccaacaggatatatacaacttttg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccacacaattgctatgcagactttgaatggagtgccaacaggatatatacaacttttg 320

                                                                       
Query: 121 agtttgttgcaaatgttaatttcagagcggccaagtccaagttttaattttgaacataat 180
           |||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct: 321 agtttgttacaaatgttaatttcagagtggccaaatccaagttttcattttgaacataat 380

                                                                       
Query: 181 cccagatcagatatttaggaaaatatcaacagcttggtaaacacaaactttccttctaaa 240
           || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgagatcagatattcaggaaaatatcaacagcttggtaaacacaaactttccttctaaa 440

                                                                       
Query: 241 tcatgcatctaaaaattatttatatcatgtttgtacaacctgtaatttctctcaatttaa 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatgcatctaaaaattattcatatcatgtttgtacaacctgtaatttctctcaatttaa 500

                                                                       
Query: 301 agaaatgtccaacatccttaatcatcaggaaaatgcaaatcaaaaacaaccctgagattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaatgtccaacatccttaatcatcaggaaaatgcaaatcaaaaacaaccctgagattc 560

                         
Query: 361 tacctcacaccagt 374
           ||||||||||||||
Sbjct: 561 tacctcacaccagt 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)