BAC Information

Click to search

BAC

Clone NameMSMg01-511H19
Chromosome2 (Build37)
Map Location 105,509,650 - 105,510,115
singlet/doubletsinglet
Overlap genePax6os1
Upstream geneTcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, LOC100043391
Downstream genePax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511H19.T7 (MSMg01no511_h19.b1)MSMg01-511H19.TJ (MSMg01no511_h19.g1)
ACCAG584671AG584672
length742769
length of high quality
(start - end)		615 (62 - 676)466 (74 - 539)
definitionCHROMAT_FILE: MSMg01no511_h19.b1 PHD_FILE: MSMg01no511_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:22 2005CHROMAT_FILE: MSMg01no511_h19.g1 PHD_FILE: MSMg01no511_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACAACTCTCTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAGT
CCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAAG
AAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAG
GAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGACCT
AAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTGG
AGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAGC
AACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCCAT
AGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCC
TAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTA
CGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGC
AAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAG
AGATGCACATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGAC
CAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAGATGCACT
AAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCN

ATGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGGAGCACCCCGCGGAAGGTCGGGCG
ACTTGCGACAAAAGTTTCCCCAAGGTTGTGTAGATGTGTGTTCCATATCG
AAGTCAAAGTCTTGGGGTTCGTTTCCCCCGAAAGGAGCACAGGACGAAAG
AATGCGGCCCTCCAGAGCTGGGCAGCGCGCGCGAAGGCCCCAGCGTGTGA
TTTGAGCTTCCTTCGGAAGACCTAATAATTAGCGATTCTCACTGAGCTAG
AATGCGGGCTCGGGTTACCGGGAACGGGTTCCTAGCAGCGGCGGAGCTCT
TTGCCTCGGCGGGAAGCATGTGGGCTCCAGGGGAACCCGGTTGCTGAGTG
CCCTGGAGAGAGATACCCAGCCATGCTCCGGCTCCAGGAAGGCCAGAACT
TGGCCGAAGTGGGTCAGGAAAGTGATTACCCCTAACTTAAACTAAAAGGT
GTTTTCGCCAGGTTGGAAAATCTCTCACCCAAGCCCTAAGCTTACCAGGA
GCCGCTCAGGCTGCCTGAGTCGGGGCACCGGAGCAACCCACCGGAAATTT
GAGGCCATGTAGCAGGCCTGGCCTGGATCTCGCCCACTCCCACGCGTGCT
CCTGACGCCCTCTCTCTAGACCCGCTGGAGGCACTTGGTCAGATCGTTTG
GCTCTCAAGCACCTGTGACAGGTGGCCAGGAGTCTAACTCTGAGCAGAGG
CCCTCTGAACGCCTACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_h19.g1 MSMg01no511_h19.g1 CHROMAT_FILE:
MSMg01no511_h19.g1 PHD_FILE: MSMg01no511_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:22 2005
         (466 letters)



>mm_chr2_105509450_105510315
          Length = 866

 Score =  893 bits (462), Expect = 0.0
 Identities = 465/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagcaccccgcggaaggtcgggcgacttgcgacaaaagtttccccaaggttgtgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggagcaccccgcggaaggtcgggcgacttgcgacaaaagtttccccaaggttgtgtag 260

                                                                       
Query: 61  atgtgtgttccatatcgaagtcaaagtcttggggttcgtttcccccgaaaggagcacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtgtgttccatatcgaagtcaaagtcttggggttcgtttcccccgaaaggagcacagg 320

                                                                       
Query: 121 acgaaagaatgcggccctccagagctgggcagcgcgcgcgaaggccccagcgtgtgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgaaagaatgcggccctccagagctgggcagcgcgcgcgaaggccccagcgtgtgattt 380

                                                                       
Query: 181 gagcttccttcggaagacctaataattagcgattctcactgagctagaatgcgggctcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcttccttcggaagacctaataattagcgattctcactgagctagaatgcgggctcgg 440

                                                                       
Query: 241 gttaccgggaacgggttcctagcagcggcggagctctttgcctcggcgggaagcatgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaccgggaacgggttcctagcagcggcggagctctttgcctcggcgggaagcatgtgg 500

                                                                       
Query: 301 gctccaggggaacccggttgctgagtgccctggagagagatacccagccatgctccggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctccaggggaacccggttgctgagtgccctggagagagatacccagccatgctccggct 560

                                                                       
Query: 361 ccaggaaggccagaacttggccgaagtgggtcaggaaagtgattacccctaacttaaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggaaggccagaacttggccgaagtgggtcaggaaagtgattacccctaacttaaact 620

                                                         
Query: 421 aaaaggtgttttcgccaggttggaaaatctctcacccaagccctaa 466
           ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 aaaaggtgttttcgccaggttggaaaatctctcactcaagccctaa 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |