BAC Information

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BAC

Clone NameMSMg01-511I09
Chromosome2 (Build37)
Map Location 105,862,499 - 105,991,442
singlet/doubletdoublet
Overlap geneLOC668765
Upstream geneLOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4
Downstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511I09.T7 (MSMg01no511_i09.b1)MSMg01-511I09.TJ (MSMg01no511_i09.g1)
ACCAG584699AG584700
length717736
length of high quality
(start - end)		671 (47 - 717)566 (78 - 643)
definitionCHROMAT_FILE: MSMg01no511_i09.b1 PHD_FILE: MSMg01no511_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:25 2005CHROMAT_FILE: MSMg01no511_i09.g1 PHD_FILE: MSMg01no511_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,990,888 - 105,991,442)(105,862,499 - 105,863,064)
sequence
CCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCACTATACCATCTGGTCCTGAGCTTTTTTTGGTTGTAAGACT
TTTAAGGACTGCTTCCATTTCTTTAGGGGTTGTAAGACTGTTTAGATGGT
ATTACCTAGTATCTGTCTAGAAAACTGTTGATTTCATCCAGATTTTCCAG
CTTTGTTGAGCATAGGCTTTTGAAGTAGGATTTGATGATTTTTGGATTTC
CTCAGTTTCTGTTGTTATATCTCCCTTTTCATTTCTGATTTTGTTAATTT
GGATACTATCTCTGTGCGAGGACTTATCTTGGTAGAATAGTGCTTGTTTA
GCTCACATTTGTTGTAATCCCCAGCAATGTAAGAGAATAGAATAAAAAGA
AGAAAATTATTCCACAGAAATGCGCTATAGAACCCAGCAAAATGCTTGCT
ACTCTCATTGGCTTTTCGGGGTACATTTTATTTAAAATGTTAACACTAAG
GCTTCAGTTATCATTCTGTCCCTAAATGCCTAACAGTTATAGTTTAGTGA
GACAGAATTTGATATGAAACATGGGATCTATAATTGAAAGCACTGTTTGA
GAGATGCTTAAAATTTCTACTAGCTCATGAATCTCTCCTGTGGACACCCT
GGAAGGGAAAGCAGGCTCATGACCTCCTCGACAAGTGTAGACTCAACACA
GGTGATCTTGTCTCATA

TCCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTGTCAGCTTCCAAAAAT
CTAGTGCTCAATAAATAAGTACTCAATAAATAAGTCAGATGGCTGATGGG
AACGGACAGGCATTACCAAGGTGCTTTCAGGGAAACATGGCGAGGGCCGT
GAAGATGCCTACTTAAAAATAAGTAAAGTTGGTATGTCTATCATAACAGT
CGATGACAGGTTAATGATATGATATAAATATGCAAGAATTGGTTTGCTAA
CTTTATTTTTACTAGCACAAGACATGACAAGAAGTAAGAGAGCTGGAGCC
ACCACAAGATGGTTAGCTTGCAGTATCACAACAGCAACTACTAAAGCAAG
CCAAGCCAAGCCAAGTCCCTGAAATTCCAACGGAAAGAAATGATTTATTT
GAGAGCCTATACCTCCCTACACATCATAAAAATTTACTGCAAATTACTTT
TATGACAAATGAATGCATAAAATCGCATATATTAATGTAGTGTGTATATC
CCTGCATACACTCAACATTGTTCAAATCAGATTAAATATATATAATTAAA
TATATGCATCCTAAAAGACTTATTTTATATGATCAAAACATTCAGAGTCC
TATCTTTTATAACATACAGAACATTATTGCTATTTCTAATCATCTTATTG
CACATTAGCATGATAGAGCTTCTTTATAATAGGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_i09.b1 MSMg01no511_i09.b1 CHROMAT_FILE:
MSMg01no511_i09.b1 PHD_FILE: MSMg01no511_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:25 2005
         (671 letters)



>mm_chr2_105990372_105991442
          Length = 1071

 Score =  953 bits (493), Expect = 0.0
 Identities = 536/555 (96%), Gaps = 9/555 (1%)
 Strand = Plus / Minus

                                                                        
Query: 126  aaactgttgatttcatccagattttccagctttgttgagcataggcttttgaagtaggat 185
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 aaactgttcatttcatccagattttccagctttgttgagcataggcttttgaagtaggat 1012

                                                                        
Query: 186  ttgatga--tttttggatttcctcagtttctgttgttatatctcccttttcatttctgat 243
            |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 ttgatgatttttttggatttcctcagtttctgttgttatatctcccttttcatttctgat 952

                                                                        
Query: 244  tttgttaatttggatactatctctgtgcgaggacttatcttggtagaatagtgcttgttt 303
            |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  tttgttaatttggacactgtctctgtgcgaggacttatcttggtagaatagtgcttgttt 892

                                                                        
Query: 304  agctcacatttgt-------tgtaatccccagcaatgtaagagaatagaataaaaagaag 356
            |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  agctcacatttgtcccttggtgtaatccccagcaatgtaagagaatagaataaaaagaag 832

                                                                        
Query: 357  aaaattattccacagaaatgcgctatagaacccagcaaaatgcttgctactctcattggc 416
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  aaaatcattccacagaaatgcgctatagaacccagcaaaatgcttgctactctcattggc 772

                                                                        
Query: 417  ttttcggggtacattttatttaaaatgttaacactaaggcttcagttatcattctgtccc 476
            | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  tattcggggtatattttatttaaaatgttaacactaaggcttcagttatcattctgtccc 712

                                                                        
Query: 477  taaatgcctaacagttatagtttagtgagacagaatttgatatgaaacatgggatctata 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  taaatgcctaacagttatagtttagtgagacagaatttgatatgaaacatgggatctata 652

                                                                        
Query: 537  attgaaagcactgtttgagagatgcttaaaatttctactagctcatgaatctctcctgtg 596
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 651  attgaaagcactgtttgagagatgcttaaaatttctgcaagctcatgaatctctcctgtg 592

                                                                        
Query: 597  gacaccctggaagggaaagcaggctcatgacctcctcgacaagtgtagactcaacacagg 656
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 591  gacaccctggaatggaaagcaggctcatgacctcctcgacaagtgtagactcaacagagg 532

                           
Query: 657  tgatcttgtctcata 671
            |||||||||||||||
Sbjct: 531  tgatcttgtctcata 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no511_i09.g1 MSMg01no511_i09.g1 CHROMAT_FILE:
MSMg01no511_i09.g1 PHD_FILE: MSMg01no511_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:25 2005
         (566 letters)



>mm_chr2_105862299_105863264
          Length = 966

 Score = 1071 bits (554), Expect = 0.0
 Identities = 563/566 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtttgtcagcttccaaaaatctagtgctcaataaataagtactcaataaataagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtttgtcagcttccaaaaatctagtgctcaataaataagtactcaataaataagtca 260

                                                                       
Query: 61  gatggctgatgggaacggacaggcattaccaaggtgctttcagggaaacatggcgagggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggctgatgggaacggacaggcattaccaaggtgctttcagggaaacatggcgagggc 320

                                                                       
Query: 121 cgtgaagatgcctacttaaaaataagtaaagttggtatgtctatcataacagtcgatgac 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtgaagatgcctacttataaataagtaaagttggtatgtctatcataacagtcgatgac 380

                                                                       
Query: 181 aggttaatgatatgatataaatatgcaagaattggtttgctaactttatttttactagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggttaatgatatgatataaatatgcaagaattggtttgctaactttatttttactagca 440

                                                                       
Query: 241 caagacatgacaagaagtaagagagctggagccaccacaagatggttagcttgcagtatc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 caagacatgacaagaagtaagagagctggagccaccacaagatggttagcttgcagtagc 500

                                                                       
Query: 301 acaacagcaactactaaagcaagccaagccaagccaagtccctgaaattccaacggaaag 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 acaacagcaactactaaagcaagccaagccaagccaagtctctgaaattccaacggaaag 560

                                                                       
Query: 361 aaatgatttatttgagagcctatacctccctacacatcataaaaatttactgcaaattac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgatttatttgagagcctatacctccctacacatcataaaaatttactgcaaattac 620

                                                                       
Query: 421 ttttatgacaaatgaatgcataaaatcgcatatattaatgtagtgtgtatatccctgcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttatgacaaatgaatgcataaaatcgcatatattaatgtagtgtgtatatccctgcat 680

                                                                       
Query: 481 acactcaacattgttcaaatcagattaaatatatataattaaatatatgcatcctaaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acactcaacattgttcaaatcagattaaatatatataattaaatatatgcatcctaaaag 740

                                     
Query: 541 acttattttatatgatcaaaacattc 566
           ||||||||||||||||||||||||||
Sbjct: 741 acttattttatatgatcaaaacattc 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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