Query= MSMg01no511_o13.b1 MSMg01no511_o13.b1 CHROMAT_FILE:
MSMg01no511_o13.b1 PHD_FILE: MSMg01no511_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:54 2005
(575 letters)
>mm_chr2_114069167_114070141
Length = 975
Score = 1002 bits (518), Expect = 0.0
Identities = 560/578 (96%), Gaps = 9/578 (1%)
Strand = Plus / Plus
Query: 5 gaattctttgttc--tcctctgagccccgttttttaatggggttatttgattttctggag 62
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattctttgttcagt--tctgagccccgttttttaatggggttatttgattttctggag 257
Query: 63 tccaccttcttgagttctttatatatattggatattagtcccctatatgatttaagatag 122
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 258 tccaccttcttgagttctttatatatattggatattagtcccctatctgatttaagatag 317
Query: 123 gtaaagatcctttcccaatctgttggtggcctttttgtcttattgacggtgtcttttgcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtaaagatcctttcccaatctgttggtggcctttttgtcttattgacggtgtcttttgcc 377
Query: 183 ttgcagaagctttgcaatttaatgaggtcccatttgtcagttcttgatcttacagcacaa 242
|||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 378 ttgcagaagctttgcagtttcatgaggtcccatttgtcagttctcgatcttacagcacaa 437
Query: 243 gccattgctgttctgttcaggaatttttcccctgtgcccatatcttcaaggcttttcccc 302
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gccattgctgttctattcaggaatttttcccctgtgcccatatcttcaaggcttttcccc 497
Query: 303 actttcacctctataagtttcagtgtctctggttttatgt-----tccttgatccactta 357
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 498 actttcacctctataagtttcagtgtctctggttttatgtggagttccttgatccactta 557
Query: 358 gatttgaccttagtaggaggagataggaatggatcgatttgcattcttctacatgataac 417
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gatttgaccttagtactaggagataggaatggatcgatttgcattcttctacatgataac 617
Query: 418 aaccagttgtgccagcaccatttgttgaaaatgactttggaatttcttatgatcaactct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaccagttgtgccagcaccatttgttgaaaatgactttggaatttcttatgatcaactct 677
Query: 478 tcttaggacttgctttttaaaaaacccttccccagcctagacaccatctataaaaccatg 537
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 678 tcttaggacttgctttttaaaaaacccttccccagccaagacaccatctataaaaccatg 737
Query: 538 atattctagctgagcagctccagggagatgatgggaat 575
||||||||| ||||||||||||||||||||||||||||
Sbjct: 738 atattctagttgagcagctccagggagatgatgggaat 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_o13.g1 MSMg01no511_o13.g1 CHROMAT_FILE:
MSMg01no511_o13.g1 PHD_FILE: MSMg01no511_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:54 2005
(358 letters)
>mm_chr2_114256639_114257396
Length = 758
Score = 679 bits (351), Expect = 0.0
Identities = 354/355 (99%)
Strand = Plus / Minus
Query: 1 aattttacctgatgtagtttgcaattctttgtgttttgttaaattaaatattcaaaaaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 733 aattttacctgatgtagtttgcaattctttgtgttttgttaaattaaatatttaaaaaac 674
Query: 61 ttaaattcaaaacctgtatctttaaatagttttagttagttgccaaatatttttctataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttaaattcaaaacctgtatctttaaatagttttagttagttgccaaatatttttctataa 614
Query: 121 ctgttacagctcaacatgaaatcattaaaatttttatatttgaattgtttttattaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctgttacagctcaacatgaaatcattaaaatttttatatttgaattgtttttattaaagc 554
Query: 181 taatgtttgtttgccttatcagttgcagaaatctactgttgctgtttacctgaaaggtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taatgtttgtttgccttatcagttgcagaaatctactgttgctgtttacctgaaaggtag 494
Query: 241 tatttacagttctgaggttgtgctgtcattgagaacatgtgagaacatgatagaagttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tatttacagttctgaggttgtgctgtcattgagaacatgtgagaacatgatagaagttgt 434
Query: 301 cctcagaaggtaaataggacttagatttagaaccagaaactaaaaatcggaatac 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cctcagaaggtaaataggacttagatttagaaccagaaactaaaaatcggaatac 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space: 261401
Effective search space used: 261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
