BAC Information

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BAC

Clone NameMSMg01-511P13
Chromosome2 (Build37)
Map Location 61,404,633 - 61,573,401
singlet/doubletdoublet
Overlap geneTank, Psmd14
Upstream geneItgb6, Rbms1, ENSMUSG00000075325
Downstream geneTbr1, LOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511P13.T7 (MSMg01no511_p13.b1)MSMg01-511P13.TJ (MSMg01no511_p13.g1)
ACCAG585041AG585042
length739730
length of high quality
(start - end)
148 (266 - 413)383 (72 - 454)
definitionCHROMAT_FILE: MSMg01no511_p13.b1 PHD_FILE: MSMg01no511_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:58 2005CHROMAT_FILE: MSMg01no511_p13.g1 PHD_FILE: MSMg01no511_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,404,633 - 61,404,780)(61,573,088 - 61,573,401)
sequence
ACTAAAAATTTTGGCCGCTAAACGACTCACTATTTCCAGAGGATCCGCGG
AATTCTCCGTCTCTCCAGAGTGCAGACAGCCAGTGTGATGCAGATGGTCA
CTGTTCCCTAGGTCTCCCTTGCAAGACATATTCATTCCCATGGTTCCGTT
CCCCTAAAGAACATTCACTGCACACCTGACAACTAATTCACCTGCTATTT
ACTGTGGCCAATTTCACTTGTCTCTGATCCTGCCTTGTCGCCTGAAAAAT
ATCAAATTTGCAATATAATTAACAAAATAAAATGAAAATACCCTATCCCA
GAAAAGGTACAGGATACAAGTTATCTTCCTGCTCCGTCCTTTTACTGAAA
TTTGCAAACTAGGTGTTAAGGTAATAAAAAGAACCTCCATGTTTCCAAGA
TTAGCCTTTTCTGGAACTGCCCTACTTCAAGGCAATCTCATTAACACCCA
TTTCACCTTCACCCACACAGCCGTCATCTCCAACAGCAGTTAATCACTAG
CAGGAGGTCACAACGTACATCCAGGCCTCCTGAGCCTTACTCCCAATTTA
TAGTTTCTGGGCCTGTTTGCTACAGAAAATTTAAACACGATGACTACACA
ATATTTTATTTGTGGTCTAAAAATATGTAGATCGACGTTTGAATTTATGC
TTCTCCCTTATCCTAATTTTCCAGCATAAATAGATTATCCGCAAATACTC
TAATATACATAAAATATTCCCAAAAAATATTTTGCGTAA
ATTGACTTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACAGCCAGCACTTGGGGAGGGAGCTTTA
TGCATACGGATTTGGGATTAAATAATCCCCAGTATACGCTATAAGTAATA
TGTACAATACACCATCTAATACAGTAACCACTGCTTCAAGAAGGTATTTA
AGGGCTGGAGAGATGGCTCAGTGGTTATGAGCACTGACTGCTGTTCCAGA
GGTCCTGAATTCAATTCCCAGCAACCACATGGTAGCTCACAAGCATCTGT
AATGGGATCCTATGACCTCTTCTGGTGTGTCTGAAGACACCTACAGTGTA
TTCATACGCATTAAATGAATAAGTAAATCTTTTTTTTTTTTAAAAGAATG
TATTTAAACAAATTATTTAAAGTTAAATAAACATTTATTTTTCAGTCATT
ATCAGTTACATATGGCTTTACTTCTATGTATTTCTGCCTTCCTTTCCATT
TCATCTACCTGATTAATACTCAACTGATAGGCATTATCTCTGAAAGGTCA
GAAAGAAACAGGAAGCATCTGTTTCTACAGAACAGAACACGGAATGGTAG
GGGCATGCGGAATTCATCAAATTTAATTTCTTAATTCCGCATCATATCAC
AAATACCTTCAACATAGGTATATTTAAAAATAATTATTTGCTTTTTAAAT
ATTCTAATTTCTCTTGCAATAACAAAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_p13.b1 MSMg01no511_p13.b1 CHROMAT_FILE:
MSMg01no511_p13.b1 PHD_FILE: MSMg01no511_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:58 2005
         (148 letters)



>mm_chr2_61404433_61404980
          Length = 548

 Score =  263 bits (136), Expect = 3e-75
 Identities = 145/148 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   taattaacaaaataaaatgaaaataccctatcccagaaaaggtacaggatacaagttatc 60
           ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 201 taattaagaaaataaaatgaaaatagcctatcccagaaaaggtacaggatacaagttagc 260

                                                                       
Query: 61  ttcctgctccgtccttttactgaaatttgcaaactaggtgttaaggtaataaaaagaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctgctccgtccttttactgaaatttgcaaactaggtgttaaggtaataaaaagaacc 320

                                       
Query: 121 tccatgtttccaagattagccttttctg 148
           ||||||||||||||||||||||||||||
Sbjct: 321 tccatgtttccaagattagccttttctg 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no511_p13.g1 MSMg01no511_p13.g1 CHROMAT_FILE:
MSMg01no511_p13.g1 PHD_FILE: MSMg01no511_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:58 2005
         (383 letters)



>mm_chr2_61573072_61573854
          Length = 783

 Score =  561 bits (290), Expect = e-164
 Identities = 308/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagccagcacttggggagggagctttatgcatacggatttgggattaaataatcccca 60
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 330 aacagccagcacttggggagggagctttatgaatacggatttgggatgaaataatcccca 271

                                                                       
Query: 61  gtatacgctataagtaatatgtacaatacaccatctaatacagtaaccactgcttcaaga 120
           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 270 gtatacgctataagtaatatgtataatacaccatctaatatagtaaccactgcttcaaga 211

                                                                       
Query: 121 aggtatttaagggctggagagatggctcagtggttatgagcactgactgctgttccagag 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 210 aggtatttaagggctggagagatggctcagtggttaggagcactgactgctgttccagag 151

                                                                       
Query: 181 gtcctgaattcaattcccagcaaccacatggtagctcacaagcatctgtaatgggatcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 150 gtcctgaattcaattcccagcaaccacatggtagctcacaagcatctgtaatgggatcca 91

                                                                       
Query: 241 atgacctcttctggtgtgtctgaagacacctacagtgtattcatacgcattaaatgaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  atgacctcttctggtgtgtctgaagacacctacagtgtattcatacgcattaaatgaata 31

                         
Query: 301 agtaaatctttttt 314
           ||||||||||||||
Sbjct: 30  agtaaatctttttt 17


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)