Query= MSMg01no512_a21.b1 MSMg01no512_a21.b1 CHROMAT_FILE:
MSMg01no512_a21.b1 PHD_FILE: MSMg01no512_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:05 2005
(652 letters)
>mm_chr2_20574261_20575312
Length = 1052
Score = 1170 bits (605), Expect = 0.0
Identities = 635/649 (97%), Gaps = 8/649 (1%)
Strand = Plus / Minus
Query: 4 ggaattctcagctgcagttgctcctggaattcagaggcaagaatgcacttgaaaagcttt 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggaattctcagcttcagttgctcctggaattcagaggcaagaatgcacttgaaaagcttt 665
Query: 64 gggattaaaggtgtctgtgaggactgatctgactccagggatgaaaggagagggaccata 123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 664 gggattaaaggtgtctgtgaggactggtctgactccagggatgaaaggagagggaccata 605
Query: 124 ttgcaggctttgaaattcggaatagaatacaatctatgcagaggactcaccttggaagcc 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttgcaggctttgaaattctgaatagaatacaatctatgcagaggactcaccttggaagcc 545
Query: 184 tcccagtgaaagcccttaggaccccacacacatgcctttgggaggaatccctaaagatga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcccagtgaaagcccttaggaccccacacacatgcctttgggaggaatccctaaagatga 485
Query: 244 gttgaattgttgtggaaccaatcaggttatttttcccctagtagcaaaggtccaactgca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gttgaattgttgtggaaccaatcaggttatttttcccctagtagcaaaggtccaactgca 425
Query: 304 gtgtaaggcacagacagtatcttaggaactctttcttacctctgtgttggtgcccacacc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtgtaaggcacagacagtatcttaggaactctttcttacctctgtgttggtgcccacacc 365
Query: 364 ctctccaaatatctcagaaagtttttgctattgcttacaagcatacactgcacacccacc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctctccaaatatctcagaaagtttttgctattgcttacaagcatacactgcacacccacc 305
Query: 424 cacatccaaagccaccctcttatgcactcctcccaaccaccaccatcataactaccacat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cacatccaaagccaccctcttatgcactcctcccaaccaccaccatcataactaccacat 245
Query: 484 gctcaatttcactgtagagagtttcaggtaaaacaaaataacccccccccaaacaaacaa 543
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 244 gctcaatttcactgtagagagtttcaggtaaaacaaaataaaactcccccaaacaaacaa 185
Query: 544 cgaatctaaacaaacaaacaaacaaacaaacaaaacctactttgagagtttcaacagaat 603
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cgaatct----aaacaaacaaacaaacaaacaaaacctactttgagagtttcaacagaat 129
Query: 604 ctcattttcaacagaatcctgctctgtttgtttgtttctaacactgtca 652
|||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 128 ctcattttcaacagaatcctgctc----tgtttgtttctaacactgtca 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_a21.g1 MSMg01no512_a21.g1 CHROMAT_FILE:
MSMg01no512_a21.g1 PHD_FILE: MSMg01no512_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:05 2005
(528 letters)
>mm_chr2_20424537_20425464
Length = 928
Score = 998 bits (516), Expect = 0.0
Identities = 525/528 (99%)
Strand = Plus / Plus
Query: 1 aagaccaacctgatctacatggtgagttacaggatagcctgggctatttagcaagactct 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 aagaccaacctgatctacatggtgagttccaggatagcctgggctatttagcaagactct 260
Query: 61 atcttgggtagatgacaaaccccacaagcaacagagctcctccatggtctcctacgttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttgggtagatgacaaaccccacaagcaacagagctcctccatggtctcctacgttgt 320
Query: 121 gtccccctaaccccttggcttcccttgatgataggctacaagctattaatcaaaaaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccccctaaccccttggcttcccttgatgataggctacaagctattaatcaaaaaaacc 380
Query: 181 ctttctccccagattgctgtcaatagtgctttatcacagcaacagacaagcaaactagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttctccccagattgctgtcaatagtgctttatcacagcaacagacaagcaaactagat 440
Query: 241 aagtctgtgttttaatttttactacatttatttacttagctagttggaagaacccatgct 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtctgggttttaatttttactacatttatttacttagctagttggaagaacccatgct 500
Query: 301 atgctatggctcatgagtagtactcagagaacaatttctaggtgtgggtggtcccagaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgctatggctcatgagtagtactcagagaacaatttctaggtgtgggtggtcccagaca 560
Query: 361 ttgaactcaagctaccatgctctgagcaggcacctttgcctactgagtcatctcaccagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ttgaactcaagctaccatgctctgagcaggcacctttgcctactgagtcatctcaccggc 620
Query: 421 cacttacattttttgtttgttttgtttttgtttgtgatggggtttcatgcagaacaggct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacttacattttttgtttgttttgtttttgtttgtgatggggtttcatgcagaacaggct 680
Query: 481 ggactcaaaccctctatggctgtgaatttctgatctttctgcctccaa 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggactcaaaccctctatggctgtgaatttctgatctttctgcctccaa 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
