Query= MSMg01no512_c04.b1 MSMg01no512_c04.b1 CHROMAT_FILE:
MSMg01no512_c04.b1 PHD_FILE: MSMg01no512_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:11 2005
(630 letters)
>mm_chr2_132060304_132061332
Length = 1029
Score = 1149 bits (594), Expect = 0.0
Identities = 618/628 (98%), Gaps = 5/628 (0%)
Strand = Plus / Minus
Query: 5 gaattcagga--ttttctactccttgtgagctatcattgctctaaaatgaatggtggagc 62
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gaattcaggaac---tctactccttgtgagctatcattgctctaaaatgaatggtggagc 773
Query: 63 agaggtggggaagcttcacagacagaaacaaggaagaaaaggctctgggaaagctttaat 122
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 772 agaggtggggaagcttcacagacagaaacaaggaaggaaaggctctgggaaagctttaat 713
Query: 123 gagcagtgagaaaccgagacagagtcccagggtaggaactgagcagggtgtgcaatttct 182
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 712 gagcagtgagaaaccgagacagagtcccagagtaggaactgagcagggtgtgcaatttct 653
Query: 183 catccaagggaggcaggaacagctctcgtgagatagcaggagttcgtcctgattattgga 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 652 catccaagggaggcaggaacagctctcgtgagatagcaggagttcgtcctgatttttgga 593
Query: 243 ggctttggctgtcctcatctgtaagtctgacagccccattcttccatcccttgcaggaac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggctttggctgtcctcatctgtaagtctgacagccccattcttccatcccttgcaggaac 533
Query: 303 ttgagaaaaagctgtctagaaaatgctccagtctgaggtaaatccttggagaaggttccc 362
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 532 ttgagaaaaagctgtctagaaaatgctccagcctgaggtaaatccttggagaaggttccc 473
Query: 363 tctggagttaatagaatctgcagcttgccctgagtctaccctccacccccctcgggacta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tctggagttaatagaatctgcagcttgccctgagtctaccctccacccccctcgggacta 413
Query: 423 ctgtctcctaaagctgagaatgggagcagccaaatccccagcagcctaggagcgttcatg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctgtctcctaaagctgagaatgggagcagccaaatccccagcagcctaggagcgttcatg 353
Query: 483 gcctggccgaagtacacaggtgctgggtgtgaccagaggacaagcagccagatgacaagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gcctggccgaagtacacaggtgctgggtgtgaccagaggacaagcagccagatgacaagc 293
Query: 543 caggccacctgcccttgtgtctgtgacttttatttctgcagagttgatgggacccagggt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 caggccacctgcccttgtgtctgtgacttttatttctgcagagttgatgggacccagggt 233
Query: 603 ctcacgtagattagacaattgctccacc 630
||||| ||||||||||||||||||||||
Sbjct: 232 ctcacatagattagacaattgctccacc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space: 631780
Effective search space used: 631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_c04.g1 MSMg01no512_c04.g1 CHROMAT_FILE:
MSMg01no512_c04.g1 PHD_FILE: MSMg01no512_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:11 2005
(502 letters)
>mm_chr2_131995038_131995938
Length = 901
Score = 878 bits (454), Expect = 0.0
Identities = 492/508 (96%), Gaps = 7/508 (1%)
Strand = Plus / Plus
Query: 1 agcacagggaatacagttagcagtagagtgcttgcctaggcatgattgaggcgctgagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agcacagggaatacagttagcagtagagtgcttgcctaggcatgattgaggtgctgagtc 260
Query: 61 aaaacccaaacatttgttccttactttggctttaaaaacctcctctgcttccaccttatt 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aaaacccaaacatttgttccttactttggctttaaaaacctcccctgcttccaccttatt 320
Query: 121 ttattttactgttccgtagcaatgctctgccttcctcaaatgcacgatctctgggtggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattttactgttccgtagcaatgctctgccttcctcaaatgcacgatctctgggtggag 380
Query: 181 gcacacatgtatgaggagtggactcatggtaaataggactgggatgctaagctttccagg 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gcacacatgtatgaggagtggactcatggtaaatagga-tgggatgctaagctttccagg 439
Query: 241 aagcgaaaatgcatcaaaaagtgccaggaagcagaggcagggggaatctctgtgggtttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagcgaaaatgcatcaaaaagtgccaggaagcagaggcagggggaatctctgtgggtttg 499
Query: 301 aggccagccagggatgcagggtgagaccatgcctcaaaataaaaccaacaacaacacaaa 360
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct: 500 aggccagccagggatgcagggtgagaccatgcctcaaaataaaaccaccaccaacaaaaa 559
Query: 361 tctagatgaaaatattgagatatctttacacgttttaactgggggggga------aatca 414
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 560 tctagatgaaaatattgaaatatctttacacgttttaactgggggggggggggggaatcg 619
Query: 415 taatcattgttgttgggtgtagtacctcatatctgtagtggcagcactggaagccagagg 474
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taatcattgtcgttgggtgtagtacctcatatctgtagtggcagcactggaagccagagg 679
Query: 475 cagggagagctacgagagtctgagacca 502
||||||||||||||||||||||||||||
Sbjct: 680 cagggagagctacgagagtctgagacca 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 901
Length adjustment: 10
Effective length of query: 492
Effective length of database: 891
Effective search space: 438372
Effective search space used: 438372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
