BAC Information

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BAC

Clone NameMSMg01-512F17
Chromosome2 (Build37)
Map Location 168,355,902 - 168,356,484
singlet/doubletsinglet
Overlap geneNfatc2
Upstream geneSnai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952
Downstream geneAtp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512F17.T7 (MSMg01no512_f17.b1)MSMg01-512F17.TJ (MSMg01no512_f17.g1)
ACCAG585335AG585336
length827785
length of high quality
(start - end)
106 (36 - 141)583 (65 - 647)
definitionCHROMAT_FILE: MSMg01no512_f17.b1 PHD_FILE: MSMg01no512_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:29 2005CHROMAT_FILE: MSMg01no512_f17.g1 PHD_FILE: MSMg01no512_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGNGATTCTCTAT
TTCCTCTGCACATGCCTTCTCCTCGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGGTGGGGGGCCACCTG
TACNTTTGCCGCCGCTGCAAGACTCCCTCCAATACTTCACATCCCCCTGT
TTCTCTTTTTACCTGCCCTTTATTATTCTTCCCCCTGCTCTTTTTTGTTT
CCCTCCCCTTTTCTCCTCTCCCTCTTTTTCCCTACTTCCCCACCTCCCCA
TCCCCTTTTTTTTTTTGCTCCTACTTCCTCCTTCCTCTCACCTCTCTTTC
TCTCTCTCCCTTCTCTTCTCTTCTTCCTTTCTTATTCTTTTTACTTCTTC
CCCCCAGCCACCCCTTCTTTCCCTTTCCTTCTTCTATCCCTCACCTCGCC
CCTTTTTTCTTTCCTCCTCTTCTTTCTTCCCTTTCTTTTTCTCTCCCCCC
CTTTCCCCTTTTCCCTCTCCTTCCTTTCTCCCCCTTCCCCCTCTTTTTTT
TTCTTCCTCCCCTTACTCTTTCTCTTTTCCTCCTCCTCCATTCTCTCCCC
CTTTCCCCTTTTTCTCTCCTTTTTCCCCCTTCCCCTTCCCCCTCCTCTTC
CTCCCCCCTCCTCTTTTCCTTCCTTACTTCCTTTCCTTCTTTCTTCTCCC
CTCCCCCTTTTTTTCCCCCTCCCCTTTTCTCCTTCACTTATCCCTCCCCC
CACCTTTTTTTCCTCACCTTCCTTCTCCCTTTTCCCTTCTTCTTCTCCTC
CACTCCTTCTCTATTTTTCTCTTTTTG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGTCGTGACCTGGGTGGGCAGGGCCTCCCATACAA
TTGCTTTAGGCATTTCCTGAAACGTGGTTGTGAGGATGAATCTGAAGGCT
GAGGAGAGAATCTGCAGGTCTCAGTCACAGACGATCGGGAGACTCTGCAT
GGGTCTCACGGTACCTGCTGCCAGGATCTGCAGACACCGCCTTTCATTTC
ATGGCCCACTGGGAAGCCTCGGAAGGCATCTTCCCTTCACTTCCTCAATG
TCCTAGAACCGTCCAAGTGACAAGCCTGGCAAATACCTGCCCAGCCTGGC
CTTGCAGGAGGGACATTAGGGAGTGTGATAGTCGGTACCCAAAGAGGGAC
CTGAGGCCTTCTGGGCTCGGGAACACTTTCTCCACTGGGAGCCTGTGGGC
AAGGACTTAGCCAACCAAGTAAAGGGCAGGGAGGAAGGAGGTCACAAGCT
CTCTACGCCTTATGTCAGACACATGGCAGACTCCCTAAGAGTCTCTGTTC
CAAGACCATACCCTAAATGAAGACAGAGTGTATGTGTGTGCTTGCATGTG
CATGTGTGTGCACATGTGTATATATAAGTGTGCATATGTATACATGTAAA
TGTGCATATTTGTGTATACACCTACATGATATATGTATCTATGTGTAGAT
GTGTATATATATGTGGTGGGCATGTATATGTATATATGTAAGTAACTATA
TATGCATGTGCTTGTATATATATGTATACATGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_f17.g1 MSMg01no512_f17.g1 CHROMAT_FILE:
MSMg01no512_f17.g1 PHD_FILE: MSMg01no512_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:29 2005
         (583 letters)



>mm_chr2_168355702_168356684
          Length = 983

 Score = 1058 bits (547), Expect = 0.0
 Identities = 574/583 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcgtgacctgggtgggcagggcctcccatacaattgctttaggcatttcctgaaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcgtgacctgggtgggcagggcctcccatacaattgctttaggcatttcctgaaacg 260

                                                                       
Query: 61  tggttgtgaggatgaatctgaaggctgaggagagaatctgcaggtctcagtcacagacga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttgtgaggatgaatctgaaggctgaggagagaatctgcaggtctcagtcacagacga 320

                                                                       
Query: 121 tcgggagactctgcatgggtctcacggtacctgctgccaggatctgcagacaccgccttt 180
           |||||||||||||||  |||||||| |||||||||||||||| |||||||||| ||||||
Sbjct: 321 tcgggagactctgcacaggtctcacagtacctgctgccaggacctgcagacactgccttt 380

                                                                       
Query: 181 catttcatggcccactgggaagcctcggaaggcatcttcccttcacttcctcaatgtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttcatggcccactgggaagcctcggaaggcatcttcccttcacttcctcaatgtcct 440

                                                                       
Query: 241 agaaccgtccaagtgacaagcctggcaaatacctgcccagcctggccttgcaggagggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaccgtccaagtgacaagcctggcaaatacctgcccagcctggccttgcaggagggac 500

                                                                       
Query: 301 attagggagtgtgatagtcggtacccaaagagggacctgaggccttctgggctcgggaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attagggagtgtgatagtcggtacccaaagagggacctgaggccttctgggctcgggaac 560

                                                                       
Query: 361 actttctccactgggagcctgtgggcaaggacttagccaaccaagtaaagggcagggagg 420
           | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 attttctccactgggagcctgtgggcaaggacttagccaactaagtaaagggcagggagg 620

                                                                       
Query: 421 aaggaggtcacaagctctctacgccttatgtcagacacatggcagactccctaagagtct 480
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 621 aaggaggtcacaagctctctatgccttacgtcagacacatggcagactccctaagagtct 680

                                                                       
Query: 481 ctgttccaagaccataccctaaatgaagacagagtgtatgtgtgtgcttgcatgtgcatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgttccaagaccataccctaaatgaagacagagtgtatgtgtgtgcttgcatgtgcatg 740

                                                      
Query: 541 tgtgtgcacatgtgtatatataagtgtgcatatgtatacatgt 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgtgcacatgtgtatatataagtgtgcatatgtatacatgt 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)