BAC Information

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BAC

Clone NameMSMg01-512G08
Chromosome2 (Build37)
Map Location 120,226,840 - 120,227,384
singlet/doubletsinglet
Overlap geneTmem87a
Upstream geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39
Downstream geneGanc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512G08.T7 (MSMg01no512_g08.b1)MSMg01-512G08.TJ (MSMg01no512_g08.g1)
ACCAG585365AG585366
length771753
length of high quality
(start - end)		---545 (72 - 616)
definitionCHROMAT_FILE: MSMg01no512_g08.b1 PHD_FILE: MSMg01no512_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:32 2005CHROMAT_FILE: MSMg01no512_g08.g1 PHD_FILE: MSMg01no512_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGTATAGGGCGGGAAATAGTNTTTTTTTTAGTATAGGGCCNNNNNNNCC
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTATTCCCAGCAGCCAACAGTGGGGCCTATAAAGGACATTTTTCC
ATCTTCTCTCCTCTGAGGGAGTACCCACTTCGGCCCCAAAAACCCTTTTT
CCTCAGAAATTGCCCCCATGCTGGCGGCCACGGCAAGGCCCCCTCCCAAA
AAAAGGGCCCCCCCTAAAAGAAACCCCAACCTCGGAAAACGGGCCCCCCC
CTATGGGTGGAAGGGCTTTTTAAATGGGGAAAAAGACAAAGCCCCCCACT
CCTAAATTTTTAAAAAACAGGGCGCGGGAGTTTTTTTTTTTAAAAGGGCG
ATCGCGCAAATTTTGAAAAAACCCTCCCCCCTCTCTCTTTTTTTTTAAAA
ACAAAATCATTTTTTTCCCACCTAGAATTTTCTTCAAAAATAAAAAAATT
TTTTTCTTTTATTTTCACATATGACCGATTCCGCGTCTTTTCCACTGTTG
TCTTTTCTCACTATTTTAAAAAAAAAAACACCTATCATAAAATAAACTCC
TCTCCACACTTCTCCTTTCTTTTTCCAGCGAAAAAAAAAAAAATAAAATA
AACCCCTCTATTCCCCTCACCCTTCTTCTTTTCTTCCCCCCTTCCCCTTA
TCTCTTTCTTATGTTTAACTTCCTTCTTTATTATTGTTTTTGTTTTTCAC
CTTAATGAACTTTACCCCCCC

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTGTACACCAGGCTAGCCTGGAACTC
ACCGAGATCCATCTATCTTTGCCCCTGCAAGTGCTGGGATTAAAGGTGGT
GCACCACCACGGTCTACCAGGCTTCTCTGGTTTTTGAAATAGGTTCTTAC
TATGTAGCCCAAGGCCAGCCTTAGGTTCAGTTTCTCAAGTGCTAGGATTA
TTAGACATGAACTACTAAATCTTGGTTCATGTGTTTTGTTTTGTTTTGAG
CATGCCTTTACCTTGAAAATGCAATTAAATTGGGTGATTGTATTCTTTAG
TTTAATAAGTGGTTGTAAAATAACTTTTGTGTGCTGAGTACTTATAGGTA
CCAGAGAAGTGGTAGAAAAACTCTCTTCTGTCACTGGGCTTCCACTCCAG
TGGGAGTGAAAGGAGCAGGTAAAATTCCTGTGAAGAATATACTCGTGATC
CTTAGTTTTAATTGTCAACAGCACAACTCAGAGTAACTTGGGAAAAGAAT
CTCAATGAGGGGTTGTCTAGATCTGGTTGGTCAGTGGGTGTGTGTGTGGG
ATTGTGTTGATTATGTTAATCACTGGGCGAAGTTTCTCCCCACACGCTCT
CCTTCTCTAGTCTTCGATATATTTAGCGAAAAAACTCATATCTACTACCT
TCTATTATCCTTCACTTATTCTCTCCCTTTCTTTTGTGCCATCCCCCTTC
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_g08.g1 MSMg01no512_g08.g1 CHROMAT_FILE:
MSMg01no512_g08.g1 PHD_FILE: MSMg01no512_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:32 2005
         (545 letters)



>mm_chr2_120226604_120227548
          Length = 945

 Score = 1054 bits (545), Expect = 0.0
 Identities = 545/545 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtacaccaggctagcctggaactcaccgagatccatctatctttgcccctgcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 actctgtacaccaggctagcctggaactcaccgagatccatctatctttgcccctgcaag 722

                                                                       
Query: 61  tgctgggattaaaggtggtgcaccaccacggtctaccaggcttctctggtttttgaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgctgggattaaaggtggtgcaccaccacggtctaccaggcttctctggtttttgaaata 662

                                                                       
Query: 121 ggttcttactatgtagcccaaggccagccttaggttcagtttctcaagtgctaggattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggttcttactatgtagcccaaggccagccttaggttcagtttctcaagtgctaggattat 602

                                                                       
Query: 181 tagacatgaactactaaatcttggttcatgtgttttgttttgttttgagcatgcctttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tagacatgaactactaaatcttggttcatgtgttttgttttgttttgagcatgcctttac 542

                                                                       
Query: 241 cttgaaaatgcaattaaattgggtgattgtattctttagtttaataagtggttgtaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttgaaaatgcaattaaattgggtgattgtattctttagtttaataagtggttgtaaaat 482

                                                                       
Query: 301 aacttttgtgtgctgagtacttataggtaccagagaagtggtagaaaaactctcttctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aacttttgtgtgctgagtacttataggtaccagagaagtggtagaaaaactctcttctgt 422

                                                                       
Query: 361 cactgggcttccactccagtgggagtgaaaggagcaggtaaaattcctgtgaagaatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cactgggcttccactccagtgggagtgaaaggagcaggtaaaattcctgtgaagaatata 362

                                                                       
Query: 421 ctcgtgatccttagttttaattgtcaacagcacaactcagagtaacttgggaaaagaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctcgtgatccttagttttaattgtcaacagcacaactcagagtaacttgggaaaagaatc 302

                                                                       
Query: 481 tcaatgaggggttgtctagatctggttggtcagtgggtgtgtgtgtgggattgtgttgat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaatgaggggttgtctagatctggttggtcagtgggtgtgtgtgtgggattgtgttgat 242

                
Query: 541 tatgt 545
           |||||
Sbjct: 241 tatgt 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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