XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTA
TGTACATCTTATCTGATTCAAAATTATAATTTTCTGAGTCTGATCTATTA
TTAGCTTGATAGTCAAAAGCTGCAATAAAATCAGAGAATAGGCAGTCAGC
ATTTTATCTCAATAAATTTTCAATGTTGTTAAACAAATTACAAGGTAAAA
TCAGCAGTAGGTTAGGTTATAAATTATATGCAAAATAAATCAATATTTAT
ATCCATATTTGTACATTCAGATCTTTAGGGTAAAATATGCAGAGAATTTA
GTCTAACTAAATTATGTTTACTTTTGTAGCCATCAAGATGTGTCAAATCT
AATGCAAGCCTATTGTTTATATGGAATATAAAATCAATGTAATTGATTTG
ATTGAATTTTTAAAATCTTCAAAGAATATGTGCCATGCCTTCTTAAATGC
AGAAAAGCCAATAATTGCTTTAAATGTAAAAATAAAATAGCATATAGAGA
TCTTTCACTTACCCATGGCAATGCATTATTATTGGTTTCTGCGTTTCACT
AACTGATAGGCTTTCATGTAAAATCAATACCTCTCAGTCTAATATGGTTT
GCATTGTTATATGGTGGGTTAGAGAAACTAAAATATAGTTTTGATGAATA
ACTTCAAGTCTTTATTTCATAATAAACTTGCCATGGGGGAAATTTAAAGG
GGCACCATTTTGTTTCTAATATGTAACAGCATCTCTCACTAATTGACAAT
TTGTTCATCGGAATGCTATCAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATCTCTAGATGTGATACANGAATAAAGGGATAAGATAAGTGAA
AACCTGGNACTGTCCTTCTTAAGGGGAGCTGTGCTATTTTGAAGAGGGGA
GTGAGTTCTTATGGGGCCTAGAAAATAAAAATGATTGGTAAAAAGTAACC
AAATTCTGTTTCTCTGGAAACTAAAAATTATTGGATGGGTGGTCGAGGGG
GCCCAGGGCCCCAAAAATGGGCCCGGGCACAAGGGTTTTCCCCAAAAAAT
TTTTTAAGGGGGGGTCCTCTTTTAAATTATAAAAAACCCCCTCAAAACTT
TTTCCCCCGGAAAAAAGGTTTCCCGGTATAGAAACCCCCCCCGCCCCCCC
TTTTTTTTTAAAGAGGGTTTGTGGGAAAAACCCCCCCCCCACAAATAAAT
TAGGGGGGGGGGGGGGGCAAAAAAAATATTTTTTTTTTTACAGGGGGGGG
TTCTTTTTTTGAGGGGGGGGTCCCCCCCCCCCCCCCAAAAAAAATCCCCC
CCCCCCAAAAAAATTCTCCCCCCCCCCCCCCCTCTTTTTTTCTTGCTTCG
GGGGGGAGGAGAAAGAAAGAGGTCTCTTTTCTCCTCCTCCCCCCCCCAAA
GGGGAAGGGGGGGGGGTTTTTTTTTTTTTTTTTTTTTTTCCTCCTTCCTT
CGTCCNGGGGGGGGGGGGGGGGGGGCGTGCGACCCACCCCCTTCCTCTAA
AAAAAAAAGGGGGGGGGTGTGGGAAAACAAAAAATG

Query= MSMg01no512_g23.b1 MSMg01no512_g23.b1 CHROMAT_FILE:
MSMg01no512_g23.b1 PHD_FILE: MSMg01no512_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:35 2005
         (572 letters)



>mm_chr2_114950607_114951579
          Length = 973

 Score = 1085 bits (561), Expect = 0.0
 Identities = 567/569 (99%), Gaps = 1/569 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactatgtacatcttatctgattc-aaaattataattttctgagtctgatctatt 63
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 773 gaattcactatgtacatcttatctgattcaaaaattataattttctgagtctgatctatt 714

                                                                       
Query: 64  attagcttgatagtcaaaagctgcaataaaatcagagaataggcagtcagcattttatct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 attagcttgatagtcaaaagctgcaataaaatcagagaataggcagtcagcattttatct 654

                                                                       
Query: 124 caataaattttcaatgttgttaaacaaattacaaggtaaaatcagcagtaggttaggtta 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 653 caataaattttcaatgttgttaaacaaattacaaggtaaaatcagcaataggttaggtta 594

                                                                       
Query: 184 taaattatatgcaaaataaatcaatatttatatccatatttgtacattcagatctttagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 taaattatatgcaaaataaatcaatatttatatccatatttgtacattcagatctttagg 534

                                                                       
Query: 244 gtaaaatatgcagagaatttagtctaactaaattatgtttacttttgtagccatcaagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtaaaatatgcagagaatttagtctaactaaattatgtttacttttgtagccatcaagat 474

                                                                       
Query: 304 gtgtcaaatctaatgcaagcctattgtttatatggaatataaaatcaatgtaattgattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gtgtcaaatctaatgcaagcctattgtttatatggaatataaaatcaatgtaattgattt 414

                                                                       
Query: 364 gattgaatttttaaaatcttcaaagaatatgtgccatgccttcttaaatgcagaaaagcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gattgaatttttaaaatcttcaaagaatatgtgccatgccttcttaaatgcagaaaagcc 354

                                                                       
Query: 424 aataattgctttaaatgtaaaaataaaatagcatatagagatctttcacttacccatggc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aataattgctttaaatgtaaaaataaaatagcatatagagatctttcacttacccatggc 294

                                                                       
Query: 484 aatgcattattattggtttctgcgtttcactaactgataggctttcatgtaaaatcaata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aatgcattattattggtttctgcgtttcactaactgataggctttcatgtaaaatcaata 234

                                        
Query: 544 cctctcagtctaatatggtttgcattgtt 572
           |||||||||||||||||||||||||||||
Sbjct: 233 cctctcagtctaatatggtttgcattgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space:   541206
Effective search space used:   541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)