Query= MSMg01no513_l18.b1 MSMg01no513_l18.b1 CHROMAT_FILE:
MSMg01no513_l18.b1 PHD_FILE: MSMg01no513_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:20 2005
(632 letters)
>mm_chr2_158445360_158446389
Length = 1030
Score = 783 bits (405), Expect = 0.0
Identities = 508/589 (86%), Gaps = 74/589 (12%)
Strand = Plus / Minus
Query: 118 atcatttcactggctcgtttactatctgtccgtttttccttccattcactcatctaccta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 atcatttcactggctcgtttactatctgtccgtttttccttccattcactcatctaccta 857
Query: 178 cccatttgctcattcatccaaccactgacactcatgacagcacccacccaccgtccatct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 cccatttgctcattcatccaaccactgacactcatgacagcacccacccaccgtccatct 797
Query: 238 gtccgtctgtctgtccatccatccgtctgtccatccatcca------------------- 278
|||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 796 gtccatctgtctgtccatccatccatctgtccatccatccatccatccatccatccatcc 737
Query: 279 ---c--ccacccatccatatatccaccagcccattgcttcagtcttcctcacaccagcgg 333
| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 736 atccatccatccatccatatatccaccagcccattgcttcagtcttcctcacatcagcgg 677
Query: 334 tcccaatgatacatcaggaagaggggaaactagaggtggttattatctctgaacttatag 393
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcccaatgatacgtcaggaagaggggaaactagaggtggttattatctctgaacttatag 617
Query: 394 gtggggtaggggagaagtctctgacgtacttgtcatttgaccctacttcttccagcctgg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtggggtaggggagaagtctctgacgtacttgtcatttgaccctacttcttccagcctgg 557
Query: 454 cccatgtctctgagtaaatatctcaggagagtggggtgctactgtgttag---------- 503
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 556 cccatgtctctgagtaaatatctcaggagagtggggtgccactgtgttagattaaaacct 497
Query: 504 ---------------------------------------tgattaaaactcttgtaaata 524
|||||||||||||||||||||
Sbjct: 496 ttggttttttttttcctttctacatatttttccattaagtgattaaaactcttgtaaata 437
Query: 525 actgtcttgccttagatttccacaaaaggaacccctgagaggaagtctccagtgcactct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 actgtcttgccttagatttccacaaaaggaacccctgagaggaagtctccagtgcactct 377
Query: 585 gtttgtttaggaggtgaccccaggcagtg-agggagaaaacagggacag 632
||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 376 gtttgtttaagaggtgaccccaggcagtgcagggagaaaacagggacag 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1030
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1020
Effective search space: 634440
Effective search space used: 634440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_l18.g1 MSMg01no513_l18.g1 CHROMAT_FILE:
MSMg01no513_l18.g1 PHD_FILE: MSMg01no513_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:20 2005
(612 letters)
>mm_chr2_158250796_158251807
Length = 1012
Score = 1118 bits (578), Expect = 0.0
Identities = 606/628 (96%), Gaps = 21/628 (3%)
Strand = Plus / Plus
Query: 1 acttaaacattctaggctttgatgtctgtagactttagttttacttttcttttccaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acttaaacattctaggctttgatgtctgtagactttagttttacttttcttttccaagtt 244
Query: 61 gggagattttttttttcttctttttagtatctta----------------gtatgtgttt 104
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 245 gggagattttttttttcttctttttagtatcttatttcttatagcacttagtatgtgttt 304
Query: 105 gaggtggtcagatggtatgactagatgcctagttaagaccatacccatgcggtccttctt 164
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gagatggtcagatggtatgactagatgcctagttaagaccatacccatgcggtccttctt 364
Query: 165 catctctgtaagttctcacctgttcattctagtgttgtgggttgttttgttttgttttgt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catctctgtaagttctcacctgttcattctagtgttgtgggttgttttgttttgttttgt 424
Query: 225 tttgttttgttttatgacagagaaaacaagttgtataataagttgaatgattcatcttcc 284
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttgtttt-----atgacagagaaaacaagttgtataataagttgaatgattcatcttcc 479
Query: 285 tttctgtcatttgttcctgttgcataatctgaggatggaatgtaattgaaatgatttctt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttctgtcatttgttcctgttgcataatctgaggatggaatgtaattgaaatgatttctt 539
Query: 345 aagtgatacatatttacatatgcaaattgggtagaatataaatactaatttttcttattt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aagtgatacatatttacatatgcaaattgggtagaatataaatactaatttttcttattt 599
Query: 405 taaagatatattcattttatattctttatgtatatgggtattttgtctgtttgtacattt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 taaagatatattcattttatattctttatgtatatgggtattttgtctgtttgtacattt 659
Query: 465 atacactagaagagaacgttagatcccatgggaccatagttatagatggttgtgagccac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 atacactagaagagaacgttagatcccatgggaccatagttatagatggttgtgagccac 719
Query: 525 catgtgggtgctgggaattgaattcaggacttcttaaccactgagccattcctccagccc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 catgtgggtgctgggaattgaattcaggacttcttaaccactgagccattcctccagccc 779
Query: 585 ctgcattttctatttttatatttctaat 612
||||||||||||||||||||||||||||
Sbjct: 780 ctgcattttctatttttatatttctaat 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
