BAC Information

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BAC

Clone NameMSMg01-514I04
Chromosome2 (Build37)
Map Location 153,488,024 - 153,488,628
singlet/doubletsinglet
Overlap geneDnmt3b
Upstream geneH13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik
Downstream geneLOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514I04.T7 (MSMg01no514_i04.b1)MSMg01-514I04.TJ (MSMg01no514_i04.g1)
ACCAG586978AG586979
length824742
length of high quality
(start - end)		42 (70 - 111)605 (71 - 675)
definitionCHROMAT_FILE: MSMg01no514_i04.b1 PHD_FILE: MSMg01no514_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:26 2005CHROMAT_FILE: MSMg01no514_i04.g1 PHD_FILE: MSMg01no514_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCGCGGAATTC
TCCACCAGCTACGATGGAGAGATTCTGATTTTGGGGGAGGGGGGGGTTGT
TTTGTTTTTGNTTTTGCCCCTAAAAGCTATTCCTGTTTGAACATCCAACT
CTGTTATTTTTACACTCCATTCATGTTAAATTAATTTAAAACCATCTAAA
TACTCCTCTGCCCGCCTTATCACTTTCTCCCCCACTTTCTATGGCCGCCC
GTTTTTCTTTATTCCTTTTCTTCCGCTTTTCTTCTTCTTCCCCACATCAT
CCTACTTAATATCTTCCATTTTTTTTTTTTTCTACATGATATCACCAGAT
TCTGCATCTTCCTCTATATCCTTGTTATCTTTTTATTCTGACCCCCCCAC
CAAACTTTCCGATCTTTTATCACAATCCCCCCCTCGTTCATTTCACTCCA
TATTCTCAACCCCCTTATGATTTCTCTATATTTATCCTACCATACTTCCT
CCTTACATCTTCAAATCACCTTTTCTCTTGATAATATAACCTCCCCTCTT
TGTTCCTCATCCTCCTCACATATCCCTCCCTCTTTATTTCACCTTTAAAA
ATCACTCACTTTTTTTTTCCACACCTATACAATATATTTCTTACTTCACT
CTTCCCCCTATTTCTTCTCCACAACTATAATCCTCACTTATACAAAATCT
CCTTTTAAATATTTATAATAACCTATCCCTTTTTCCCTCCATACACCCCC
TTTTTTCTACTCTACTGTCACAACCAATATCTTTCTCTTGACTCACATAA
TCAACTCCATCAACCATTTCCACN

GCAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTACTGCACAAGAAAGTCTGTTTGAGTTG
GTCCTTCTGTATATCTGTCCTCAGTACAATAATAGAGCAAAACTCACTCA
TTTCTGGGATGAGCTAGCTTGCTTTGGCCATGACATCTTTGGTGTTTGGG
TTGTTTCTTTGAGACAGTATCCTGGCTGCCTTGGTTGTCACTGTAAACCA
GGGTGGCCTCCACCAACCCCTTGGCTCAGGTCTTCCTGTATGTGTTCTGA
ATAAGTTGAGAGGTGTCTAAAAGGCAGCATTAGTCTCATTTCTGTAACGT
GCTGATGGTCTGGGATTTATCTTTTTTAATACACGGGATTAGCAGAGGTG
ACATTTCACTAGACAGAAACTAGGTGATTATAGGATATACTTTGGGGACT
ACATCAATATAATGATGCTTCTGTCCCATGGCCTTTTTTCCTCTAGGACA
TGACAGGAGATGGAGACGGAGATGATGAAGTGGATGATGGGAATGGCTCT
GATATTCTAATGCCAAAGCTCACCCGGGAGACCAAGGACACCAGGACGCG
CTCTGAAAGCCCGGCTGTAAGTCCCACTGCTTATCAGGCACCTCTCACCA
TCCTTGGGCCTGCATAAAAAAATGAGAGGCTGAGACACTGTTTAATCAGA
ATTTGTTTTCCCGGCACATTGGATTTTATGTGTGTTGCGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_i04.g1 MSMg01no514_i04.g1 CHROMAT_FILE:
MSMg01no514_i04.g1 PHD_FILE: MSMg01no514_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:27 2005
         (605 letters)



>mm_chr2_153487824_153488828
          Length = 1005

 Score = 1131 bits (585), Expect = 0.0
 Identities = 600/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctactgcacaagaaagtctgtttgagttggtccttctgtatatctgtcctcagtacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctactgcacaagaaagtctgtttgagttggtccttctgtatatctgtcctcagtacaat 260

                                                                       
Query: 61  aatagagcaaaactcactcatttctgggatgagctagcttgctttggccatgacatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagagcaaaactcactcatttctgggatgagctagcttgctttggccatgacatcttt 320

                                                                       
Query: 121 ggtgtttgggttgtttctttgagacagtatcctggctgccttggttgtcactgtaaacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgtttgggttgtttctttgagacagtatcctggctgccttggttgtcactgtaaacca 380

                                                                       
Query: 181 gggtggcctccaccaaccccttggctcaggtcttcctgtatgtgttctgaataagttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtggcctccaccaaccccttggctcaggtcttcctgtatgtgttctgaataagttgag 440

                                                                       
Query: 241 aggtgtctaaaaggcagcattagtctcatttctgtaacgtgctgatggtctgggatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgtctaaaaggcagcattagtctcatttctgtaacgtgctgatggtctgggatttat 500

                                                                       
Query: 301 cttttttaatacacgggattagcagaggtgacatttcactagacagaaactaggtgatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttttttaatacacgggattagcagaggtgacatttcactagacagaaactaggtgatta 560

                                                                       
Query: 361 taggatatactttggggactacatcaatataatgatgcttctgtcccatggccttttttc 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggatgtactttggggactacatcaatataatgatgcttctgtcccatggccttttttc 620

                                                                       
Query: 421 ctctaggacatgacaggagatggagacggagatgatgaagtggatgatgggaatggctct 480
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 621 ctctaggacatgacaggagatggagacagagatgatgaagtagatgatgggaatggctct 680

                                                                       
Query: 481 gatattctaatgccaaagctcacccgggagaccaaggacaccaggacgcgctctgaaagc 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 gatattctaatgccaaagctcacccgtgagaccaaggacaccaggacgcgctctgaaagc 740

                                                                       
Query: 541 ccggctgtaagtcccactgcttatcaggcacctctcaccatccttgggcctgcataaaaa 600
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccggctgtaagtcctactgcttatcaggcacctctcaccatccttgggcctgcataaaaa 800

                
Query: 601 aatga 605
           |||||
Sbjct: 801 aatga 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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