BAC Information

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BAC

Clone NameMSMg01-514J07
Chromosome2 (Build37)
Map Location 153,623,384 - 153,623,944
singlet/doubletsinglet
Overlap genenone
Upstream geneBcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541
Downstream geneLOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514J07.T7 (MSMg01no514_j07.b1)MSMg01-514J07.TJ (MSMg01no514_j07.g1)
ACCAG587031AG587032
length746747
length of high quality
(start - end)		620 (40 - 659)562 (72 - 633)
definitionCHROMAT_FILE: MSMg01no514_j07.b1 PHD_FILE: MSMg01no514_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:32 2005CHROMAT_FILE: MSMg01no514_j07.g1 PHD_FILE: MSMg01no514_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATT
CTAGCATACCTTTATATGGTATGATATTGGTTTTTTTTTTTTGATTTTTT
TTAATTAGGTATTTAGCTCCTTTACATTTCCAATGCTATACCAAAAGTCC
CCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGG
CCCTGGTGTTCCCCTGTACTGGGGCGTATAAAGTTTGCAAGTCCAATGGG
CCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAG
CTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACC
TATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTC
CATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTC
TGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGG
TCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAT
GCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATC
CTTTCATCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTT
TTGTTCCCAAATCTAANGAGGGGCATAGTGTCCACACTTCAGGCTTCATT
CTTCTTGAGTTTATGTGTTTAGCAAATTATATCCTATATCTCGGGG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGATATTGGTGGCTACAAATGTATCCG
GGCCTTCACCGTTATTGATCTGGATAGCTGTGTCATGGTCATGGACTATT
GGTGAGTCTCATAGGAGATGGGTACAGGATCTTGGCAGCCACCACATCAC
TGGGAAGGGGGCTGGGGCCCCAGGGAGGCACTAGGAGAGCTGGTTCTGAG
CTCATCGCCGTACGGTTCCTATATTGTCCCTCCCTGATTCTCTCCCTGGG
TCTTGCAGTCACTCTACTCTTGAATTATGCTTGCTCACCCCCCCTCCCCC
GCCCCTTTCTTATCCTGTTATCGACCAAGTGTTAGCAGAGGCTCACTCTG
CTGCATTGAGGTCTCTGGGAAGTAAAAATGGTTGAAACAGAACCTGAATT
TTGGTTCAGTGATGACTAGGGTATGGTTGGCACTGGGGTTGAGACCCAGA
CCAAAGCTGGAAGTCTTGTTAGAACTGTCCTTGTCCCTAAGATGACAGGG
CCTTGGCACAAGAGCCAGGGCAGAAGAGTTAATAACCTAAATGCCTCAAG
CAGCCTGAAAAACTCCATGCAGGAATATCTGATACACTGATATTGTCAGT
CCTGTCAGTGGGCAGTTATGAGCAGAATGGTAAGGGTCAATGTGTCATCA
GGACCTCCCACGAGAGCTCCTGGCAAGGATGCCAGCATGTTGAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_j07.g1 MSMg01no514_j07.g1 CHROMAT_FILE:
MSMg01no514_j07.g1 PHD_FILE: MSMg01no514_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:32 2005
         (562 letters)



>mm_chr2_153623184_153624144
          Length = 961

 Score = 1017 bits (526), Expect = 0.0
 Identities = 553/562 (98%), Gaps = 1/562 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgatattggtggctacaaatgtatccgggccttcaccgttattgatctggatagctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgatattggtggctacaaatgtatccgggccttcaccgttattgatctggatagctgt 260

                                                                       
Query: 61  gtcatggtcatggactattggtgagtctcataggagatgggtacaggatcttggcagcca 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gtcatggtcatggactattggtgagtctcacaggagatgggtacaggatcttggcagcca 320

                                                                       
Query: 121 ccacatcactgggaagggggctggggccccagggaggcactaggagagctggttctgagc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ccacatcactgggaagggggctggggcctcagggaggcactaggagagctggttctgagc 380

                                                                       
Query: 181 tcatcgccgtacggttcctatattgtccctccctgattctctccctgggtcttgcagtca 240
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatcaccatacggttcctatattgtccctccctgattctctccctgggtcttgcagtca 440

                                                                       
Query: 241 ctctactcttgaattatgcttgctcaccccccctcccccgcccctttcttatcctgttat 300
           ||||||||||||||| |||||  ||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ctctactcttgaattgtgctttttcacccccc-tcccccgcccctttcttatcctgttat 499

                                                                       
Query: 301 cgaccaagtgttagcagaggctcactctgctgcattgaggtctctgggaagtaaaaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cgaccaagtgttagcagaggctcactctgctgcattgaggtctctgggaagtaaaaatgg 559

                                                                       
Query: 361 ttgaaacagaacctgaattttggttcagtgatgactagggtatggttggcactggggttg 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 ttgaaacagaacctgaattttggttcagtgatgacaagggtatggttggcactggggttg 619

                                                                       
Query: 421 agacccagaccaaagctggaagtcttgttagaactgtccttgtccctaagatgacagggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agacccagaccaaagctggaagtcttgttagaactgtccttgtccctaagatgacagggc 679

                                                                       
Query: 481 cttggcacaagagccagggcagaagagttaataacctaaatgcctcaagcagcctgaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttggcacaagagccagggcagaagagttaataacctaaatgcctcaagcagcctgaaaa 739

                                 
Query: 541 actccatgcaggaatatctgat 562
           ||||||||||||||||||||||
Sbjct: 740 actccatgcaggaatatctgat 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space:   524952
Effective search space used:   524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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