Query= MSMg01no514_l16.b1 MSMg01no514_l16.b1 CHROMAT_FILE:
MSMg01no514_l16.b1 PHD_FILE: MSMg01no514_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:44 2005
(663 letters)
>mm_chr2_53543995_53545061
Length = 1067
Score = 926 bits (479), Expect = 0.0
Identities = 515/529 (97%), Gaps = 4/529 (0%)
Strand = Plus / Minus
Query: 7 gaattccaagatatcatcaataaagatcctccaatcaataaataagtc----agattttc 62
||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 529 gaattccaagatagcattaataaagatcctccaatcaataaataagtcagatagattttc 470
Query: 63 atacctcagattatttttatatgcatgttattaaaacagttttacatttcaagttcatgt 122
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 469 atacctcagattatttttatatgcatgttattaaaacatttttacatttcaagttcatgt 410
Query: 123 ataaaaattagtttattatctgtgctctgcataaatcactgactatgcatgcttccagcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ataaaaattagtttattatctgtgctctgcataaatcactgactatgcatgcttccagcc 350
Query: 183 tcccttggtctctttacctaatatactctgacagatccttacgatcccaagctacttaat 242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 349 tcccttggtctctttacctaatatactctgacagatccttatgatcccaagctacttaat 290
Query: 243 gactttcagttatactatataacccagtgcatctaagtatatcacaacatttattcaatt 302
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 289 gactttcagttatactatataacccagtgcatctaagtatagcacaacatttattcaatt 230
Query: 303 ctaaatagtatttctgaggctacaatgcaaagacctatatctggtcaaagtgccaaaaat 362
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 229 ctaaatagtatttctgaggctacagtgcaaagacctatatctggtcaaagtgccaaaaat 170
Query: 363 tggtgaccaataatcactctcatccttaaatggaatatgtgttccccataccccacagat 422
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 169 tggtgaccaataatcactctcatccttaaatggaatatctgttccccataccccacagat 110
Query: 423 ccagggaacatcaaagaaaagagagcaggacaaatttaagagccagaggatagggaaaaa 482
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct: 109 ccagggaacatcaaagaaaagagagcaggataaatttaagagccagaggataggggaaga 50
Query: 483 tgtcatggaatgttgccctacaaatgcattgttattgtaactgtagaca 531
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 tgtcatggaatgttgccctacaaatgcattgttattgtaactgtagaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1067
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1057
Effective search space: 690221
Effective search space used: 690221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_l16.g1 MSMg01no514_l16.g1 CHROMAT_FILE:
MSMg01no514_l16.g1 PHD_FILE: MSMg01no514_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:44 2005
(575 letters)
>mm_chr2_53374100_53375074
Length = 975
Score = 1011 bits (523), Expect = 0.0
Identities = 561/575 (97%), Gaps = 4/575 (0%)
Strand = Plus / Plus
Query: 1 tttctcccagtattggtcaacttttctctgtggctactcactttaaggatctatctatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 205 tttctcccagtattggtcaacttttctctgtggctactcactttaaggatctatc--tgt 262
Query: 61 atctatctatctatctatctatctatctatctatctatctatctatctatcaatcaatgt 120
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 263 a--tatctatctatctatctatctatctatctatctatctatctatctatctatcaatgt 320
Query: 121 gagtgcctgtgtatcaatagagaagcttggtactggataaatggtgcacaaaccatggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtgcctgtgtatcaatagagaagcttggtactggataaatggtgcacaaaccatggaa 380
Query: 181 taaaggtagaacactggggaaattgtctggagcccatcaagaactctggtaccagacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaggtagaacactggggaaattgtctggagcccatcaagaactctggtaccagacaag 440
Query: 241 tgaagcctacggtatgcttcagcacaaagtattgaaagcttggggtctgcacagctaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagcctacggtatgcttcagcacaaagtattgaaagcttggggtctgcacagctaagc 500
Query: 301 aagtttgattacaatattatcagttgatgagcatttatttctacagtgggaacttcagac 360
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 501 aagtttgattacaatattatcagttgatgagcatttattcctacagtggaaacttcagac 560
Query: 361 aagtgtattactaagcagcatccacaatagaacactggctctaagaaacataaatagacc 420
||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 aagagtattactaagcaacatccacaatagaacactggccctaagaaacataaatagacc 620
Query: 421 agttatttggatgtgtgtgatagagtaggaataaaaacgttatgtaaacctcactgcaga 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttatttggatgtgtgtggtagagtaggaataaaaacgttatgtaaacctcactgcaga 680
Query: 481 atcatctgtaaagggcagatttagaggtgagtacaggtgcatctagacttgtatctaggt 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcatctggaaagggcagatttagaggtgagtacaggtgcatctagacttgtatctaggt 740
Query: 541 ataggtgggacaaatgtgctacatgcggcagcaca 575
||||||||||||||||||||||||| |||||||||
Sbjct: 741 ataggtgggacaaatgtgctacatgtggcagcaca 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
