Query= MSMg01no514_n13.b1 MSMg01no514_n13.b1 CHROMAT_FILE:
MSMg01no514_n13.b1 PHD_FILE: MSMg01no514_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:53 2005
(701 letters)
>mm_chr2_139600853_139601952
Length = 1100
Score = 1294 bits (669), Expect = 0.0
Identities = 690/697 (98%), Gaps = 1/697 (0%)
Strand = Plus / Minus
Query: 5 gaattcatctccagttgtttagagaaagaacaaaactgctctgagactcgtttggacctt 64
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 900 gaattcatctccagttgtttagagaaagaacaaaactgctctgagactcatctggacctt 841
Query: 65 gtctgcccctgggcatcaaaggattgatctctgtttgcaacatggtcggctgtagggatg 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 840 gtctgcccctgggcatcaaagggttgatctctgtttgcaacatggtcggctgtagggatg 781
Query: 125 ctgggaagcaggcaagctggcaggtggatcatctggagagagaacagtgcctgcactcgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ctgggaagcaggcaagctggcaggtggatcatctggagagagaacagtgcctgcactcgg 721
Query: 185 tcatcagccaagaaaacgggtggggtatctttttccataggctaacctgtactcttcaag 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 720 tcatcagccaagaaaacgggtggggtatcttttcccataggctaacctgtactcttcaag 661
Query: 245 ctacatccagacacccagagatagatgtgtcacaagatgtcttcaatggcaatgagctgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ctacatccagacacccagagatagatgtgtcacaagatgtcttcaatggcaatgagctgg 601
Query: 305 cttgctcagggcagttttattaattgcttcaatataaagaattgcccagttaagaactag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cttgctcagggcagttttattaattgcttcaatataaagaattgcccagttaagaactag 541
Query: 365 gcaaactagattgcagcttcctgattagttcaggaagaacagagcttggggttggtaaat 424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 540 gcaaactagattgcagcttcctgatcagttcaggaagaacagagcttggggttggtaaat 481
Query: 425 aatgacatcccaacacggtattgacttctgatatttaattctgtgctttgtgctgattac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aatgacatcccaacacggtattgacttctgatatttaattctgtgctttgtgctgattac 421
Query: 485 tatttgaagtgcagcccattcacagtttgtatgacataagataaccagatgagcaagcga 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 420 tatttgaagtgcagcccattcacagtttgtatgacataagataaccagatgagc-agcga 362
Query: 545 caccccttaccagccctccctcactctaggggacaaaggctaaggagtaccttgcccaga 604
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caccccttaccggccctccctcactctaggggacaaaggctaaggagtaccttgcccaga 302
Query: 605 gtcacacagtatatatacatgtggctcactacagagcccatttaaacggctagcccaaga 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtcacacagtatatatacatgtggctcactacagagcccatttaaacggctagcccaaga 242
Query: 665 atctctttcttctgctacctggacaccctctgcacac 701
|||||||||||||||||||||||||||||||||||||
Sbjct: 241 atctctttcttctgctacctggacaccctctgcacac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1100
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1090
Effective search space: 753190
Effective search space used: 753190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_n13.g1 MSMg01no514_n13.g1 CHROMAT_FILE:
MSMg01no514_n13.g1 PHD_FILE: MSMg01no514_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:53 2005
(632 letters)
>mm_chr2_139476486_139477516
Length = 1031
Score = 1129 bits (584), Expect = 0.0
Identities = 620/632 (98%), Gaps = 1/632 (0%)
Strand = Plus / Plus
Query: 1 aatttttgttagacctttatccatcctcaggctcaggacattccttcttgctattcccac 60
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aatttttgttaaacctttatccatcctcaggctcaggacattccatcttgctattcccac 260
Query: 61 tacctggaatgtgtgtctctaaatggctggctttaggtagtagaatatttttctactact 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctggaatgtgtgtctctaaatgactggctttaggtagtagaatatttttctactact 320
Query: 121 aaaaattgtgacttccactatagtagacacttgccgagtgtggataggtcgtatggagga 180
||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |||
Sbjct: 321 aaaaattgtgacttccactatagtagacacttgcccagtgtggatagggcg-atggcgga 379
Query: 181 agtgccatacatgtctgtgcatgtatgcccagaatataatgtagattggacttagaagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtgccatacatgtctgtgcatgtatgcccagaatataatgtagattggacttagaagac 439
Query: 241 aatgtgagaaagaactagtaagacggggttgagttcaggtgtgtgtatgtacatatgctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 aatgtgagaaagaactagtaagacggggttgagttcaggtgtgtgtatgtacacatgctt 499
Query: 301 gcacacggggacacaaatgtgtggatatgaatgtaaatggaggccagaggttgacattgg 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 500 acactcggggacacaaatgtgtggatatgaatgtaaatggaggccagaggttgacactgg 559
Query: 361 gtgccttcttctgttgctcttcaacctatctcttgaagcaaagtttcccactaaactcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgccttcttctgttgctcttcaacctatctcttgaagcaaagtttcccactaaactcag 619
Query: 421 agctcactgtttcaagatatccaaatttctctagcaatccctggctcttcctcccaagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agctcactgtttcaagatatccaaatttctctagcaatccctggctcttcctcccaagtg 679
Query: 481 ttggcattataggcacctaccaagcctgctcagctatatgtgggtcccagaaatccaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttggcattataggcacctaccaagcctgctcagctatatgtgggtcccagaaatccaaac 739
Query: 541 tctagttttcaagcttgaatagcaagtgctttatttagggagtcatctacccaactcact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 740 tctagttttcaagcttgaatagcaagtgctttatttagggagtcatctacccagctcact 799
Query: 601 agtaagttttgaactgagtatatgttgaaata 632
||||||||||||||||||||||||||||||||
Sbjct: 800 agtaagttttgaactgagtatatgttgaaata 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1031
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1021
Effective search space: 635062
Effective search space used: 635062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
