Query= MSMg01no514_o10.b1 MSMg01no514_o10.b1 CHROMAT_FILE:
MSMg01no514_o10.b1 PHD_FILE: MSMg01no514_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:58 2005
(678 letters)
>mm_chr2_158603431_158604507
Length = 1077
Score = 872 bits (451), Expect = 0.0
Identities = 499/515 (96%), Gaps = 2/515 (0%)
Strand = Plus / Minus
Query: 165 ttctcagtctcgatgcctatccttctactgcagcagagccctccaagggaagaattctca 224
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttctcagtcttgatgcctatccttctactgcagcagagccctccaagggaagaattctca 628
Query: 225 gtcttgatgcctatccttctactgcagcagagctctccaagggaaggcttcgtctccaag 284
|||| |||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 627 gtctcgatgcc-ctccttctactgcagcagagccctccaaaggaaggcttcgtctccaag 569
Query: 285 gtggagaccccaagacagtaactgacaggcttgtaccccgtaaacatctgtagaattaaa 344
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 568 gtggagacctcaagacagtaaccgacaggcttgtaccccgtaaacatctgtagaattaaa 509
Query: 345 aagaaatcctaaagccagctaaggattggtggcatcttcagaagcttataggccctgatg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aagaaatcctaaagccagctaaggattggtggcatcttcagaagcttataggccctgatg 449
Query: 405 gctttcacacagcctgtgtctaccccgttcatttggggcctgttaacagagtttaaaggc 464
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 448 gctttcacacagcctgtgtctaccccgttcacttggggcctgttaacagagtttaaaggc 389
Query: 465 aaaagccaggacaggagctcagcgtggcacttgctagctgtgtgacctggtgttgacctc 524
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 388 aaaagccaggacaggagctcagcgtggcacttgctagctgtgtgacctgatgttgacctc 329
Query: 525 tctcagccttgggttccttcctttctagaaggccaggatagcagcaccgctgagatggtt 584
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 328 tctcagccttgggttccttcctttctagaaggccaggatagcagcactgcttagatggtt 269
Query: 585 gagggagagcaagtctggagtgagcttggctcagttaggcagctggtgcctctgagtc-a 643
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 268 gagggagagcaagtctggagtgagcttggctcagttaggaagctggtgcctctgagtcca 209
Query: 644 aggcaggctggcctgtactgggcagagatggctgc 678
||||||||||||||| |||||||||||| ||||||
Sbjct: 208 aggcaggctggcctgcactgggcagagacggctgc 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space: 712756
Effective search space used: 712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_o10.g1 MSMg01no514_o10.g1 CHROMAT_FILE:
MSMg01no514_o10.g1 PHD_FILE: MSMg01no514_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:58 2005
(661 letters)
>mm_chr2_158556955_158558015
Length = 1061
Score = 1210 bits (626), Expect = 0.0
Identities = 653/666 (98%), Gaps = 10/666 (1%)
Strand = Plus / Plus
Query: 1 agggtagcatggggtctgcccaggatggagaggcagcaggaagatgcaccgagggttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtagcatggggtctgcccaggatggagaggcagcaggaagatgcaccgagggttgga 260
Query: 61 gctctttgcaaagctgccactccttttgccacatgacttcaggctaaatgtcagcctcct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gctctttgcaaagctgccactccttttgccacatgacttcaggctaaatgtcagcctc-t 319
Query: 121 -tacctggggacctcatttgcacatggtaatagcaaggcttcagcagtggctctgtcatc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtacctggggacctcatttgcacatggtaatagcaaggcttcagcagtggctctgtcatc 379
Query: 180 ggctgtcttcttccccgtgtgatgttctagaacaccgagctccgtcggcagcagtcctgg 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtctgtcttcttccccgtgtgatgttctagaacaccgagctccgtcggcagcagtcctgg 439
Query: 240 ccttagcctgcaccttttgccatctcttccatggtttttatttggcagtgttttggccga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccttagcctgcaccttttgccatctcttccatggtttttatttggcagtgttttggccga 499
Query: 300 gtggttcagtctgcaggctttggagccggctgagcctgggttcaaatccaagccttggga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtggttcagtctgcaggctttggagccggctgagcctgggttcaaatccaagccttggga 559
Query: 360 tgacggagatggcgcagtgagtggagttgactgagccatctctaagaacagggtttgatc 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgacggagatggctcagtgagtggagttgactgagccatctctaagaacagggtttgatc 619
Query: 420 cccaggacacctgtaaaggtagaaggagagaaccaagtcacagagttgtcctttgacctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cccaggacacctgtaaaggtagaaggagagaaccaagtcacagagttgtcctttgacctc 679
Query: 480 cataggcactctgtggagcgtctatgccccctctagtgcgctctctctctctctctctct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cataggcactctgtggagcgtctatgccccctctagtgcgctctctctctctctctctct 739
Query: 540 ctctctctctctctctctttcatacacagacacacacatgtacagagacacacagacatg 599
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 740 ctctctctctctct----ttcatacacagacacacacgtgtacagagacacacagacatg 795
Query: 600 catagatataggcatgagcttacacacacacaca----tacacaaacacacacatataca 655
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 796 catagatataggcatgagcttacacacacacacacacatacacaaacacacacatataca 855
Query: 656 gatacc 661
||||||
Sbjct: 856 gatacc 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
