BAC Information

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BAC

Clone NameMSMg01-515A07
Chromosome2 (Build37)
Map Location 5,774,354 - 5,774,825
singlet/doubletsinglet
Overlap geneNudt5
Upstream geneLOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d, LOC666599, Cdc123
Downstream geneSec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515A07.T7 (MSMg01no515_a07.b1)MSMg01-515A07.TJ (MSMg01no515_a07.g1)
ACCAG587362AG587363
length778957
length of high quality
(start - end)		720 (47 - 766)---
definitionCHROMAT_FILE: MSMg01no515_a07.b1 PHD_FILE: MSMg01no515_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:08 2005CHROMAT_FILE: MSMg01no515_a07.g1 PHD_FILE: MSMg01no515_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGATCCGCGG
AATTCTCAGGACTTCTTTCGTCCCTCTAAGGCGTTCTCTTCCATCCCCAC
TCTCCATCCCTTGCTATCTACATTTCTCAGAAGACTATCCTCCCAACCTT
CCTAAGTCCTCAAAACTATTTCACCTCCTCACTCCAGGGCTTAGGGCATG
GGCTTGATTCCAGGACACCGCTCCCCTTAAATACCAAAATTCATGTGGTC
ACTTAAGTTAAATGGTATAACATTTGCACTTAACCTAACCTATTTATATC
CTCTTGTAAATCTCAAATAATCTCCAGGAACACACGATACTTAACATAAT
GTATATGCTATACAGACATTATACAGTATTGCTTAGGGAATAATGAAGAA
CAGAAGCACTTAGGTTCAACAGAGGTACACTTCCCACCTCACCCTAATGC
TTCCCACCTGCAACTGGTTGAAACTGAGGTTACAGAATCCACAGCACCAA
CTGTGTAGGCATCAATCTTCTTGCCAACAGTCTACAAAGATAAATGTAGC
ATTTCCCTTCCCTAAAACACAACCAACAACAAAACGACACGCATTCATAC
TCCTTTGTGCCTTAAAAAAGTGTAGTATCTGATGCTCAGGCTAGCCTTCA
CTGTGGTGGGCCCCAACACACAACAGGCAGATGAGAGAAAGGCTCTGCCT
TCTGGGACCTCTCCTCTAGTGGGGAGGTAGGGAGGAAAAGCAAGGACCAA
CATGAGAAGTTTGTCAAGTGAGCCCCAG

GTGGTTCTTTNTNGNTAGGGGTGTATGGTTATCTTTCCTCATATAAAACA
GATGTATGGGCCCGGGGGGGGCCACACCAGGGTGCCTTTTTTCCACCATT
TATGGGGGGAGGCCACACATCAAAGTGTATCATTGGCGGAGATAATTCTG
GTAGGTGGGGGGAAGAGAGAGGGTGCCTCTTCTGGTGGTTGGTGCCGCCC
CCCCCCCCGGAAAGAAAAATTTTCTTTTCCCACTTTATTGGTGCCAGGGG
ATGGGGAAGAATTTCCCTTCTTTGTTTTGATGGTGGGGGGTGTCTATAAA
AAAAACATTCTCTCCTTTCTGCTGGGGGGGCTCGGCGCCCCTACCAAGNT
AACTCACCTTCCCTCTCTCTTCTCTTGGTGCTACCAAATAATAATACATA
TTTTTCTCTTTCTCCTCGTGTATGGTTTGTTTATATTAAAAGTGTCGTAT
GATCTATCTGAGTGTCCTTTTTCGTTTACTTCTCTCCATAATCATACCTT
CATCCCTGTCTTTTTTTCTATTACTACGATTCTACCATTTTCTTTCGGCT
TTATATCTTGTGTACGACATACTCGTATGTATGTTATTGTAATTAACTAT
GTATACATGGCATCTGTGTATCTGCTTTCTCCTTTATCACTATCGTCTCC
TTATTTCGTATTGTTGCGGATTTCTTGTATTTCCTCCATAATATTTAAGG
TTTTCTGCTTGTGTTTGTCGTTTTATGATCACCCTTATTCTTTCTTACTC
CTATACTGCATTTGTTTGATATGTCATCCCGCTAACCCTCGTTTTTTCCA
TTTTATATAGATCATATTTGCTATTCGTTTAGATTCTTGCTTTCTACTCT
TGTCCTTTCTCATAGTTTCTTTATGTTGTCTGTCATTCGTACTCCTTCTT
TCATATACTTTACACTCTGTACTACTTTCGGTCATTTCACGCTTTCTACT
TCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_a07.b1 MSMg01no515_a07.b1 CHROMAT_FILE:
MSMg01no515_a07.b1 PHD_FILE: MSMg01no515_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:08 2005
         (720 letters)



>mm_chr2_5773706_5774825
          Length = 1120

 Score =  874 bits (452), Expect = 0.0
 Identities = 467/472 (98%)
 Strand = Plus / Minus

                                                                        
Query: 249  tatatcctcttgtaaatctcaaataatctccaggaacacacgatacttaacataatgtat 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 tatatcctcttgtaaatctcaaataatctccaggaacacacgatacttaacataatgtat 1061

                                                                        
Query: 309  atgctatacagacattatacagtattgcttagggaataatgaagaacagaagcacttagg 368
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 atgctatccagacattatacagtattgcttagggaataatgaagaacagaagcacttagg 1001

                                                                        
Query: 369  ttcaacagaggtacacttcccacctcaccctaatgcttcccacctgcaactggttgaaac 428
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1000 ttcaacagaggtacacttcccacctcaccctaatacttcccacctgcaactggttgaaac 941

                                                                        
Query: 429  tgaggttacagaatccacagcaccaactgtgtaggcatcaatcttcttgccaacagtcta 488
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 940  tgaggttacagaatccacagcaccaactgtgtaggcatcaatcttcttgccaacagtcaa 881

                                                                        
Query: 489  caaagataaatgtagcatttcccttccctaaaacacaaccaacaacaaaacgacacgcat 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 880  caaagataaatgtagcatttcccttccctaaaacacaaccaacaacaaaacgacatgcat 821

                                                                        
Query: 549  tcatactcctttgtgccttaaaaaagtgtagtatctgatgctcaggctagccttcactgt 608
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 820  tcatactcctttgtgccttaaaaaagtgtagtatctgatgctcaggatagccttcactgt 761

                                                                        
Query: 609  ggtgggccccaacacacaacaggcagatgagagaaaggctctgccttctgggacctctcc 668
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  ggtgggccccaacacacaacaggcagatgagagaaaggctctgccttctgggacctctcc 701

                                                                
Query: 669  tctagtggggaggtagggaggaaaagcaaggaccaacatgagaagtttgtca 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  tctagtggggaggtagggaggaaaagcaaggaccaacatgagaagtttgtca 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space:   788100
Effective search space used:   788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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