Query= MSMg01no515_c20.b1 MSMg01no515_c20.b1 CHROMAT_FILE:
MSMg01no515_c20.b1 PHD_FILE: MSMg01no515_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:23 2005
(652 letters)
>mm_chr2_47085613_47086664
Length = 1052
Score = 1245 bits (644), Expect = 0.0
Identities = 647/648 (99%)
Strand = Plus / Plus
Query: 5 gaattcttatctttataagcactatgtttccctcatgtggagaacaaacatctctttctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatctttataagcactatgtttccctcatgtggagaacaaacatctctttctt 264
Query: 65 acagagaataaaacctgggaacagaaattattcaattaatatttgttgaatgagtgcatg 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagagaataaaacctgggaatagaaattattcaattaatatttgttgaatgagtgcatg 324
Query: 125 aataataaatgaatttgtatggaagatagaggtggtagatatacaggaaaatgtgtttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aataataaatgaatttgtatggaagatagaggtggtagatatacaggaaaatgtgtttct 384
Query: 185 taatccatttgttcatcaattattaattgagtacttactactacctggcaaaggaagagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taatccatttgttcatcaattattaattgagtacttactactacctggcaaaggaagagg 444
Query: 245 cttaggagtacacctgggggatatagacaagtatgcctaaactataatttctgtcttctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttaggagtacacctgggggatatagacaagtatgcctaaactataatttctgtcttctg 504
Query: 305 aatctatataataaatattgtatgcctgctatgtgccagcacggctttaatgcctgaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatctatataataaatattgtatgcctgctatgtgccagcacggctttaatgcctgaaga 564
Query: 365 tagagtcatgaagatgaatagattctcctatctcttaaattttacatttcatggagtcta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagagtcatgaagatgaatagattctcctatctcttaaattttacatttcatggagtcta 624
Query: 425 atatgtaggttacttctgatgtagactaaggactaattaaaagattggatattggcctta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atatgtaggttacttctgatgtagactaaggactaattaaaagattggatattggcctta 684
Query: 485 atgaaaatcaacatctaaggagagaaatttggggataacggtgctgctgcattgtgagga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgaaaatcaacatctaaggagagaaatttggggataacggtgctgctgcattgtgagga 744
Query: 545 agcacctggatgctattgaggatactctattcaatcatgattttcacaacctgaggtttt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agcacctggatgctattgaggatactctattcaatcatgattttcacaacctgaggtttt 804
Query: 605 cctgggcttctcagttatgcggcttcagcactcactctgctacctgag 652
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cctgggcttctcagttatgcggcttcagcactcactctgctacctgag 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_c20.g1 MSMg01no515_c20.g1 CHROMAT_FILE:
MSMg01no515_c20.g1 PHD_FILE: MSMg01no515_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:23 2005
(657 letters)
>mm_chr2_47097996_47099052
Length = 1057
Score = 893 bits (462), Expect = 0.0
Identities = 540/594 (90%), Gaps = 48/594 (8%)
Strand = Plus / Minus
Query: 5 aagactagatttaggataccagatctttaaagctgaatggtctcagtgttatttcattta 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aagactagatttaggatatcagatctttaaagctgaatggtctcagtgttatttcattta 533
Query: 65 gcagcaaatggactttcatagttccacaggctccaagatcttcaagttcaagtaattgct 124
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 532 gcagcaaatggcctttcatagttcaacaggctccaagatcttcaagttcaagtaattgct 473
Query: 125 attattaattatagactcagattacaaagaaaaaatatgaaataatgttatagtttcaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 attattaattatagactcagattacaaagaaaaaatatgaaataatgttatagtttcaga 413
Query: 185 aacaatagacctctgttgaatacaatctttgtgagtaacgagtgtaaactctcattaaca 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 412 aacaatagacctctgttgaatacaatctttgtgagtaactagtgtaaactctcattaaca 353
Query: 245 agataagaattatactttttagtatttaatttttcactcttaatttctattttgtaatta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agataagaattatactttttagtatttaatttttcactcttaatttctattttgtaatta 293
Query: 305 taaaaggtaaatattacactaccaagaatttgtaattttgaaaggctgtgtaagtatttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 taaaaggtaaatattacactaccaagaatttgtaattttgaaaggctgtgtaagtatttg 233
Query: 365 atttgctgaaaagatttactaatgatttcatacaca--cacacacaca--------cacg 414
|||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 232 atttgctgaaaagatttactaatgatttcatacacatacacacacacatgcacacacacg 173
Query: 415 cacacaca-t-----------------gcacacacac------------------tacaa 438
|||||||| | |||||||||| |||||
Sbjct: 172 cacacacactcacacacacgcacacacgcacacacacacacacacacatacacactacaa 113
Query: 439 gtataatacatagcatacattatatatcaaatacatatcaaataacatataaataatata 498
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 112 gtataatacataccatacattatatatcaaatacatatcaaataacata--aataatata 55
Query: 499 ttacacatgactggataaattttatttaaatatccagttttaatagacagataa 552
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 54 ttacacatgactggataaattttatttaaatatccagttttaataaacagataa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
