Query= MSMg01no515_d08.b1 MSMg01no515_d08.b1 CHROMAT_FILE:
MSMg01no515_d08.b1 PHD_FILE: MSMg01no515_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:25 2005
(675 letters)
>mm_chr2_4505674_4506748
Length = 1075
Score = 1245 bits (644), Expect = 0.0
Identities = 665/672 (98%), Gaps = 1/672 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcattactagga-ctcagggatctgggagaatggaaatcaagggaatatgggc 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttcattactaggatctcagggatctgggagaatggaaatcaagggaatatgggc 263
Query: 64 ttccagaccagagaccttgaagaataggatggtatgcttagaggcctgctttgagtctag 123
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 ttcctgaccagagaccttgaagaataggatggtatgcttagaggtctgctttgagtctag 323
Query: 124 cagagctgttcaatgcaaagacacagaagtcggcattctgagacatctcctttacaattg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagagctgttcaatgcaaagacacagaagtcggcattctgagacatctcctttacaattg 383
Query: 184 agatagcctccaatccattgcctggtcctggaaccatccaaacattcagttgtctcttaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agatagcctccaatccattgcctggtcctggaaccatccaaacattcagttgtctcttaa 443
Query: 244 ggaaatacagtccccggcccgcaccccaccaccactacaaagacctttggggatttttat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaaatacagtccccggcccgcaccccaccaccactacaaagacctttggggatttttat 503
Query: 304 taggattgctttttcttatattgtttaattcatggcaaattggcatctttaaaacaataa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taggattgctttttcttatattgtttaattcatggcaaattggcatctttaaaacaataa 563
Query: 364 catctggatccaggtctacagtagtcacctctgtttatttatatctctagttgttcccag 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 564 catctggatccaggtctacagtagtcgcctctgtttatttatatctctagttgtttccag 623
Query: 424 caaggagttacacttttcgtagtaggatgctcatctttatctacactaacctaagtccct 483
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 624 caaggagttacacttttcgtagtaggatgctcatctttacctacactaacctaagtccct 683
Query: 484 gaaatggcttctggtaggccaggctggttttgaacttgcattcctcctgccttggcattt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaaatggcttctggtaggccaggctggttttgaacttgcattcctcctgccttggcattt 743
Query: 544 gagaaaccaaagttacagacatagatccagctctctagggatgcgagagctggtggtggt 603
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 744 gagaaaccaaagttacagacatagatccagctctctagggatgcgagagttggtggtggt 803
Query: 604 gaagtctgagccccctggatgcatactcggtgctatctgttgatttctaacggttcagct 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaagtctgagccccctggatgcatactcggtgctatctgttgatttctaacggttcagct 863
Query: 664 agtatgaatgag 675
||||||||||||
Sbjct: 864 agtatgaatgag 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_d08.g1 MSMg01no515_d08.g1 CHROMAT_FILE:
MSMg01no515_d08.g1 PHD_FILE: MSMg01no515_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:25 2005
(607 letters)
>mm_chr2_4661077_4662083
Length = 1007
Score = 1164 bits (602), Expect = 0.0
Identities = 605/606 (99%)
Strand = Plus / Minus
Query: 1 tcttctgaaaccagtagagggaccagaggaaggagggttgaaaaaggactgactgagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tcttctgaaaccagtagagggaccagaggaaggagggttgaaaaaggactgactgagaag 747
Query: 61 tttttcttagaagcagaaggttgggctccttaatggataacctagtcttcaggagggcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tttttcttagaagcagaaggttgggctccttaatggataacctagtcttcaggagggcgc 687
Query: 121 tcggatactcactgtatccagaaaagtggggagaagccgaggccactgcctttgccggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcggatactcactgtatccagaaaagtggggagaagccgaggccactgcctttgccggtg 627
Query: 181 ctcctggggtacaggaaccctgggactcctggacgggcagcacacagagggaaagcactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctcctggggtacaggaaccctgggactcctggacgggcagcacacagagggaaagcactt 567
Query: 241 ggcttgcacattcaggacagatggggcagaaagtcagaatctggtgactgctgagggact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggcttgcacattcaggacagatggggcagaaagtcagaatctggtgactgctgagggact 507
Query: 301 acaaaaaagctgagtcagtctccagaacaggggcagacaggcaggctgacacacaggccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acaaaaaagctgagtcagtctccagaacaggggcagacaggcaggctgacacacaggccc 447
Query: 361 agatgcagggagtagttggtgcaacagctggattagggtgatcttcccaagatctgaatt 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 446 agatgcagggagtagttggtgcaacagctagattagggtgatcttcccaagatctgaatt 387
Query: 421 cacttctcaactgcactgacttgccactggctacattatgttagtttcttgaattaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cacttctcaactgcactgacttgccactggctacattatgttagtttcttgaattaaaaa 327
Query: 481 gggttgcctcgaaactgtactacagtaacctaagataacctaagggctatgcagaagcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gggttgcctcgaaactgtactacagtaacctaagataacctaagggctatgcagaagcag 267
Query: 541 accagaagggctcaggctattcgtagtttccaaggtgctggttaatgaaacccctaccgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 accagaagggctcaggctattcgtagtttccaaggtgctggttaatgaaacccctaccgc 207
Query: 601 ctctga 606
||||||
Sbjct: 206 ctctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
