Query= MSMg01no515_e12.b1 MSMg01no515_e12.b1 CHROMAT_FILE:
MSMg01no515_e12.b1 PHD_FILE: MSMg01no515_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:32 2005
(704 letters)
>mm_chr2_68818668_68819771
Length = 1104
Score = 1272 bits (658), Expect = 0.0
Identities = 691/704 (98%), Gaps = 4/704 (0%)
Strand = Plus / Plus
Query: 5 gaattcctatctaatcttctgccgtagcctccgtcattaccctcagcccggtgttagtct 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcctatctaatcctctgccgtagcctccgtcattaccctcagcccggtgttagtct 260
Query: 65 gtttggcagcaagtgctcgggtcggtaagactccaagcacgtgcgatgaagagatgtctc 124
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gtttggcagcaagtgcttggatcggtaagactccaagcacgttcgatgaagagatgtctc 320
Query: 125 ttcatcatgctcaacctctactgctctgtgctatttttattttacttcagaactctttaa 184
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatcatgctcacccgctactgctctgtgctatttttattttacttcagaactctttaa 380
Query: 185 aatcctgtaagatcccatgcccctgggcttatgttagtgtatgattctttcattttagct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcctgtaagatcccatgcccctgggcttatgttagtgtatgattctttcattttagct 440
Query: 245 acacataacatcctgaatagtcccccttaagaatgaaaaaggatgctttgttcatacact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacataacatcctgaatagtcccccttaagaatgaaaaaggatgctttgttcatacact 500
Query: 305 gccattgtacttagaaaagttattttaaggtagtatttataaagatttcctgaatctttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccattgtacttagaaaagttattttaaggtagtatttataaagatttcctgaatctttt 560
Query: 365 attgttaaacatcttatgtaaatcattcgatgcttgcttgaggtatttggtgagtcattc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgttaaacatcttatgtaaatcattcgatgcttgcttgaggtatttggtgagtcattc 620
Query: 425 atcaactagtactaggtaggaagacaagatgaataataagattcattcattcattcattc 484
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcaactagtactaggtaggacgacaagatgaataataagattcattcattcattcattc 680
Query: 485 att----taaaaagagcctatagtctgttctttgccaggcctgtcttcttcctgtgggcg 540
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 attcatttaaaaagagcctatagtctgttctgcgccaggcctgtcttcttcctgtgggcg 740
Query: 541 ctgcagtgaacagagagtgtgttccgtctccgtgaagcttatgttctcagacctcacact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgcagtgaacagagagtgtgttccgtctccgtgaagcttatgttctcagacctcacact 800
Query: 601 gaagcatagagaccagagtgtagatccggacgccatcactcagttcctctgtgagcccag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaagcatagagaccagagtgtagatccggacgccatcactcagttcctctgtgagcccag 860
Query: 661 gcaaggcacttcgcatgtctgactcacagtgttgctttttcaca 704
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gcaaggcacttcgcatgtctgactcacagtgttgctttttcaca 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_e12.g1 MSMg01no515_e12.g1 CHROMAT_FILE:
MSMg01no515_e12.g1 PHD_FILE: MSMg01no515_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:32 2005
(674 letters)
>mm_chr2_68963314_68964387
Length = 1074
Score = 1054 bits (545), Expect = 0.0
Identities = 555/559 (99%), Gaps = 2/559 (0%)
Strand = Plus / Minus
Query: 1 agtacacaagtatgttcttttttcctctggaataaattgctaatcaaatgctttgttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agtacacaagtatgttcttttttcctctggaataaattgctaatcaaatgctttgttatt 500
Query: 61 ttctatgtatttcttacgcgtgagggtgttccctaaaggcaaccacaaacagccatctac 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttctatgtatttcttactcgtgagggtgttccctaaaggcaaccacaaacagccatctac 440
Query: 121 agtgggaagttaaaaccgatgcataccaccatcagctttccttctgatggtttccatagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agtgggaagttaaaaccgatgcataccaccatcagctttccttctgatggtttccatagc 380
Query: 181 aactgaggcctgttcagtaccaagcaagccccacattcagctgtcctgttcctttcatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aactgaggcctgttcagtaccaagcaagccccacattcagctgtcctgttcctttcatct 320
Query: 241 ctttcacactggtggtacatttctccagtttcagtggcttttgtgcctttgattgatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctttcacactggtggtacatttctccagtttcagtggcttttgtgcctttgattgatttg 260
Query: 301 aagagtaccagctgaggtttgcttgcctggcatgtgtgaggtctgagtttgatactcagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aagagtaccagctgaggtttgcttgcctggcatgtgtgaggtctgagtttgatactcagc 200
Query: 361 acacacccacacacacacacatgtgcatacacacatgtatgaacactaacatacacatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 199 acacacccacacacacacacatgtgcatacacacatgtatgaacactaacatacatatat 140
Query: 421 atagaatgggggggggga--agacaggaagattaacagttaattattttacaaaatgtct 478
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atagaatggggggggggagaagacaggaagattaacagttaattattttacaaaatgtct 80
Query: 479 ttcccattgggtgtgtctggtgatcactcatggttctggagatgcagaacatgcttgtct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 ttcccattgggtgtgtctggtgatcactcatggttctggagatgcagaacatgcttgtct 20
Query: 539 ggagaatcacagaggcagc 557
|||||||||||||||||||
Sbjct: 19 ggagaatcacagaggcagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
