Query= MSMg01no515_o23.b1 MSMg01no515_o23.b1 CHROMAT_FILE:
MSMg01no515_o23.b1 PHD_FILE: MSMg01no515_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:28 2005
(660 letters)
>mm_chr2_68079841_68080900
Length = 1060
Score = 1000 bits (517), Expect = 0.0
Identities = 536/543 (98%), Gaps = 2/543 (0%)
Strand = Plus / Minus
Query: 4 gaattcaataagggatccttgtggtttcgtttcagatgcactgttgggtaatcaggttgt 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaattcaataagggaagcttgtggtttcgtttcagatgcactgttgggtaatcaggttgt 482
Query: 64 aacagtgtactgtggaaaggcgtaatgaaggaagattggaacttccctctatcgacaatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aacagtgtactgtggaaaggcgtaatgaaggaagattggaacttccctctatcgacaatt 422
Query: 124 tcaaatgtcagataagcagctttctccagatcacaaatgaggtacacacagtccagcatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaaatgtcagataagcagctttctccagatcacaaatgaggtacacacagtccagcatg 362
Query: 184 gagacaaaagggctgatgtcattgattccagatggctcttccatcgtgaggacacattag 243
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 361 gagacaaaaggactgatgtcattgattccagatggctcttccatcatgaggacacattag 302
Query: 244 agctgtccttcctctgctacatgtattcaacagagaagcaactcagaagttctttcccag 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agctgtccttcctctgctacatgtattcaacagagaagcaactcagaagttctttcccaa 242
Query: 304 gaagaatccttttcttctgtagttgtttagtactcccaacacacacacacacacacacac 363
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 241 gaagaatccttttcttctgtagttgtttagtactccca--acacacacacacacacacac 184
Query: 364 acacacacacacacacacacacacacacttccaaacctcctgcattgttgttaacaccca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 acacacacacacacacacacacacacacttccaaacctcctgcattgttgttaacaccca 124
Query: 424 gggattctcacatgctgaacctgctttggagctgtgtagatggagcccaggctcaagtac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gggattctcacatgctgaacctgctttggagctgtgtagatggagcccaggctcaagtac 64
Query: 484 aggaacttcctctaggctggactgccagcctacacttgtagccacttagctgttctctat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aggaacttcctctaggctggactgccagcctacacttgtagccacttagctgttctctat 4
Query: 544 tgc 546
|||
Sbjct: 3 tgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_o23.g1 MSMg01no515_o23.g1 CHROMAT_FILE:
MSMg01no515_o23.g1 PHD_FILE: MSMg01no515_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:28 2005
(443 letters)
>mm_chr2_67933029_67933870
Length = 842
Score = 329 bits (170), Expect = 3e-94
Identities = 173/174 (99%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 1 aaaagaaagcctccattccccccattgaatgaggtctcatttgtaaaatgaaaaccaaaa 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagaaagcctccattccccc-attgaatgaggtctcatttgtaaaatgaaaaccaaaa 259
Query: 61 ccaatgagaatcataacaaaccagtgagataatcattgaccactgcaggagggaaagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccaatgagaatcataacaaaccagtgagataatcattgaccactgcaggagggaaagcca 319
Query: 121 tgacatcctaactatccagtgcacacagcatcccaagctatgtccttcaaatgt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgacatcctaactatccagtgcacacagcatcccaagctatgtccttcaaatgt 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 842
Length adjustment: 10
Effective length of query: 433
Effective length of database: 832
Effective search space: 360256
Effective search space used: 360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
