BAC Information

Click to search

BAC

Clone NameMSMg01-515P06
Chromosome2 (Build37)
Map Location 164,984,379 - 165,087,019
singlet/doubletdoublet
Overlap geneCdh22
Upstream geneKcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40
Downstream geneSlc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515P06.T7 (MSMg01no515_p06.b1)MSMg01-515P06.TJ (MSMg01no515_p06.g1)
ACCAG588066AG588067
length785790
length of high quality
(start - end)		615 (45 - 659)615 (76 - 690)
definitionCHROMAT_FILE: MSMg01no515_p06.b1 PHD_FILE: MSMg01no515_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:29 2005CHROMAT_FILE: MSMg01no515_p06.g1 PHD_FILE: MSMg01no515_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,086,558 - 165,087,019)(164,984,379 - 164,984,993)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCTGTGTGGCAGGTCTGAAAGGAGCTCTAAAGGTCATTGTCTGG
GGGCACTCAAACCACCCTTGTGCCTTGTCACGACTAACATGGAGGGACGA
CTCGATGACAATAGTCCTACCATTTCCCCTCATGAGCCGCCTCATCAACC
GGCCCAGAAAGAGAGGGTGGAGAACCCATCTAGTGTTAGCATGAGGTCAG
GGATGGAGAGAGATCTGTGTTCAAATCTCAGCTCTGTGGTTAATGCCTAT
GTGTCTCTGGCCGAACTACCGTACCTCTCAGAGCCCCACTGGGCTCATTT
CATTAAACAAGGATAATGCTTGAACTTCTAATCTCCCAGCTGCCCTCTGT
CCTCACGGCCTGGACATTCTTCCTGTACTGTTGCAAGCATTACGGGCCAG
GAATGATGTGAGCAGAGTCCTCCAGATAGGGTCTGACCCCTCATAAGCGT
TCAGTCAGTGGTGGCTCTAAGTGCGTTGTTTATTCCAGCCGCAGCCCTGT
TCCGAGAGTCAAGGATGCAGGTAGGGAGGATCACCTGGCTCTTTGCTCAT
CCTTAGAAAACGCCAGCCCTGCAGGCAGCCTTGGCTTGTTGCCCTCCACC
AGCTGAGCTGGTGACCGGGACCTGCAGAAGCAATATTCTCCAAGCTTGCA
GGGCTGGAGACCACTGGACAGACAGACAGATCCTGAGCTGCCTTTGAGAA
AGCACAGTGAGCAGTAAGTCCAGGGCTGCCCTTGG

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGCTGGGCACCTACTGTATACCTA
GAGTCACAGCCTCTTAGTCCATTACTAGTCCATAGTGCATCTCAGAGATG
CACAGTGGACCTCTGGAATATATTACAGGTGAGGAAATGGGCCAGATGGG
AAAGATTTGTTTGAGTGTACAGAGAGAGAATATGGTGGGATTTGAACACA
GGACTACATTGTCAGAGCCCCTTTGGGGACTTGTGTCAACACAGGCGTGG
TGACTCTGGGGAAATGGCCTGGTGTGCTGAGCCATAACCACTAACAGACC
TTGATCAGAGACATGCCACAAACTCCCTTGTCCCTGGCCTCTCCTCCAAA
CTCCTCAGATCATGCTGACAATCCTTTTGTTTCAGCACCAAGAACAGCGC
CCAGCGGATCCAAGAACGGAATGGCTGCAGGCAGTCTCAGGAGGCCCCGC
TGCTGTATACAACGTGTCCAGACCTCCCTCACAGAGGCACTGGAGTGGGA
GAGGATACACGAAGTGTCAGGCTCACGATGGGTGCTCGATAAATAGGGAT
GGTGTAACGGTTACGAGGCAGAATCTCTCTGTCTCTTCTCTGCCTGTTCC
TTCCATCCCACAGGCAAGTCACAGTGCTGGGCTGAGTGACTCCCTGGGGA
CATGGCTGAGCTCTCTCACTCTCTCATTCTCTCACTCTCTCTCTCTCCCT
GAATGCATCCCAGGGATTCCTTTCGGGGATGCTGGGATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_p06.b1 MSMg01no515_p06.b1 CHROMAT_FILE:
MSMg01no515_p06.b1 PHD_FILE: MSMg01no515_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:29 2005
         (615 letters)



>mm_chr2_165086005_165087019
          Length = 1015

 Score =  832 bits (430), Expect = 0.0
 Identities = 454/462 (98%)
 Strand = Plus / Minus

                                                                        
Query: 154  accggcccagaaagagagggtggagaacccatctagtgttagcatgaggtcagggatgga 213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 accggcccagaaagagagggtggagaacccatctagtgttagcatgaggtcagggatgga 956

                                                                        
Query: 214  gagagatctgtgttcaaatctcagctctgtggttaatgcctatgtgtctctggccgaact 273
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 955  gagagatctgtgttcaaatctcagctctgtggttaatgcctgtgtgtctctggccgaact 896

                                                                        
Query: 274  accgtacctctcagagccccactgggctcatttcattaaacaaggataatgcttgaactt 333
            |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  accgcacctctcggagccccactgggctcatttcattaaacaaggataatgcttgaactt 836

                                                                        
Query: 334  ctaatctcccagctgccctctgtcctcacggcctggacattcttcctgtactgttgcaag 393
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 835  ctaatctcccagctgccctctgtcctcacagcctggacattcttcctgtactgttgcaag 776

                                                                        
Query: 394  cattacgggccaggaatgatgtgagcagagtcctccagatagggtctgacccctcataag 453
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 775  cattacgggccaggaatgatgtgagcagagtcctccagacagggtctgacccctcataag 716

                                                                        
Query: 454  cgttcagtcagtggtggctctaagtgcgttgtttattccagccgcagccctgttccgaga 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  cgttcagtcagtggtggctctaagtgcgttgtttattccagccgcagccctgttccgaga 656

                                                                        
Query: 514  gtcaaggatgcaggtagggaggatcacctggctctttgctcatccttagaaaacgccagc 573
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 655  gtcaaggatgcaggtagggaggatcacctggctctttgctcatccttaaaaaacgccagc 596

                                                      
Query: 574  cctgcaggcagccttggcttgttgccctccaccagctgagct 615
            || |||||||||||||||||| ||||||||||||||||||||
Sbjct: 595  cccgcaggcagccttggcttgctgccctccaccagctgagct 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_p06.g1 MSMg01no515_p06.g1 CHROMAT_FILE:
MSMg01no515_p06.g1 PHD_FILE: MSMg01no515_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:29 2005
         (615 letters)



>mm_chr2_164984179_164985193
          Length = 1015

 Score = 1174 bits (607), Expect = 0.0
 Identities = 613/615 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctgggcacctactgtatacctagagtcacagcctcttagtccattactagtccatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctgggcacctactgtatacctagagtcacagcctcttagtccattactagtccatag 260

                                                                       
Query: 61  tgcatctcagagatgcacagtggacctctggaatatattacaggtgaggaaatgggccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatctcagagatgcacagtggacctctggaatatattacaggtgaggaaatgggccag 320

                                                                       
Query: 121 atgggaaagatttgtttgagtgtacagagagagaatatggtgggatttgaacacaggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggaaagatttgtttgagtgtacagagagagaatatggtgggatttgaacacaggact 380

                                                                       
Query: 181 acattgtcagagcccctttggggacttgtgtcaacacaggcgtggtgactctggggaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattgtcagagcccctttggggacttgtgtcaacacaggcgtggtgactctggggaaat 440

                                                                       
Query: 241 ggcctggtgtgctgagccataaccactaacagaccttgatcagagacatgccacaaactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcctggtgtgctgagccataaccactaacagaccttgatcagagacatgccacaaactc 500

                                                                       
Query: 301 ccttgtccctggcctctcctccaaactcctcagatcatgctgacaatccttttgtttcag 360
           |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 501 ccttgtccctggcctctcctccaagctcctcagatcatgctgagaatccttttgtttcag 560

                                                                       
Query: 361 caccaagaacagcgcccagcggatccaagaacggaatggctgcaggcagtctcaggaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccaagaacagcgcccagcggatccaagaacggaatggctgcaggcagtctcaggaggc 620

                                                                       
Query: 421 cccgctgctgtatacaacgtgtccagacctccctcacagaggcactggagtgggagagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccgctgctgtatacaacgtgtccagacctccctcacagaggcactggagtgggagagga 680

                                                                       
Query: 481 tacacgaagtgtcaggctcacgatgggtgctcgataaatagggatggtgtaacggttacg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacacgaagtgtcaggctcacgatgggtgctcgataaatagggatggtgtaacggttacg 740

                                                                       
Query: 541 aggcagaatctctctgtctcttctctgcctgttccttccatcccacaggcaagtcacagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggcagaatctctctgtctcttctctgcctgttccttccatcccacaggcaagtcacagt 800

                          
Query: 601 gctgggctgagtgac 615
           |||||||||||||||
Sbjct: 801 gctgggctgagtgac 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |