Query= MSMg01no516_g02.b1 MSMg01no516_g02.b1 CHROMAT_FILE:
MSMg01no516_g02.b1 PHD_FILE: MSMg01no516_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:05 2005
(611 letters)
>mm_chr2_22176570_22177580
Length = 1011
Score = 1122 bits (580), Expect = 0.0
Identities = 601/608 (98%), Gaps = 1/608 (0%)
Strand = Plus / Plus
Query: 4 ggaattctaaatgccagttctcttggaggacttacagtttgggcttgttaagtaaataca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaaatgccagttctcttggaggacttacagtttgggcttgttaagtaaataca 263
Query: 64 actaagaattttactaaaatggatttctccttacattactctttagagacctggctttga 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actaagtattttactaaaatggatttctccttacattactctttagagacctggctttga 323
Query: 124 cattttcacagttatctaacaatgacagtgctttctaacagggatttctttctaccttct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cattttcacagttatctaacaatgacagtgctttctaacagggatttctttctaccttct 383
Query: 184 agtgttggagagtgtacacatatatgagtgggtgcatgcatgtaggtgtgtggatctgtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtgttggagagtgtacacatatatgagtgggtgcatgcatgtaggtgtgtggatctgtg 443
Query: 244 ggggccagagatataaggtgttattccttaggctctgtctgccattttcattgaaacatg 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggg-ccagagatataaggtgttattccttaggctctgtctgccattttcattgaaacatg 502
Query: 304 gtttctcatgagtcagggactctcaccacctaggctaaggttagaaagcccctgagatca 363
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 503 gtttctcataagtcagggactctcaccacctaggctaaggtcagaaagcccctgagatca 562
Query: 364 tgctggctccacctccccaattttgggattactcacatgcgttacctccgctacctatac 423
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 563 tgctggctccacctccccaattttgggattactcacatgcgttacctctgctacctatac 622
Query: 424 attagttctggaaaccagagtcaggtccctgtacttgaaaagcaagcacataccaactga 483
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 623 attagttctgggaaccagagtcaggtccctgtacttgaaaaacaagcacataccaactga 682
Query: 484 gctatctcccaggccctggctaggtctttctttgattttctattaagccagtctgcttct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gctatctcccaggccctggctaggtctttctttgattttctattaagccagtctgcttct 742
Query: 544 gtatgacaccaagctattgaactccacctactgtctgctgatttctctatagatttcagc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtatgacaccaagctattgaactccacctactgtctgctgatttctctatagatttcagc 802
Query: 604 aatgtcct 611
||||||||
Sbjct: 803 aatgtcct 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_g02.g1 MSMg01no516_g02.g1 CHROMAT_FILE:
MSMg01no516_g02.g1 PHD_FILE: MSMg01no516_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:05 2005
(509 letters)
>mm_chr2_22342242_22343150
Length = 909
Score = 609 bits (315), Expect = e-178
Identities = 327/331 (98%)
Strand = Plus / Minus
Query: 179 gatccacactctcctataagaagtatatggacagcacaaattagagttctttggacacac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gatccacactctcctataagaagtatatggacagcacaaattagagttctttggacacac 831
Query: 239 acacatacacaccccacaaagttgggaggaggtagagatgtaagggtggaggagataaga 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 830 acacatacacaccccacaaagttgggaggaggtagagatataagggtggaggagataaga 771
Query: 299 ggaggaacagggctttgaaataagaacaaaacatagtatgacgttctctaagaaataaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ggaggaacagggctttgaaataagaacaaaacatagtatgacgttctctaagaaataaaa 711
Query: 359 atattacaacagatgaatatgaaaagtcatttcactacatattaaaagacaaggaaaatc 418
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atattaaaacagatgaatatgaaaagtcatttcactacatattaaaagacaaggaaaatc 651
Query: 419 agaaggtttgaaggttattcaagtctgtttctcactgtattttgagaattagtgggcgag 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 650 agaaggtttgaaggttattcaagtctgtttctcactgtattttgagaattagtgggtgag 591
Query: 479 aaagtccatatgagatgcatctgggaagcat 509
|||||||||||||||||||| ||||||||||
Sbjct: 590 aaagtccatatgagatgcatatgggaagcat 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
