Query= MSMg01no516_h10.b1 MSMg01no516_h10.b1 CHROMAT_FILE:
MSMg01no516_h10.b1 PHD_FILE: MSMg01no516_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:12 2005
(684 letters)
>mm_chr2_116042516_116043599
Length = 1084
Score = 1029 bits (532), Expect = 0.0
Identities = 637/684 (93%), Gaps = 23/684 (3%)
Strand = Plus / Minus
Query: 8 ttctgaatttgggtaaatattgtgggcatttctgtattagattaacagttcaactggtag 67
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1073 ttctgaatttgggtaaatattgtgggcatttctgtagtagattaacagttcaactggtag 1014
Query: 68 actcagtaaagcctttctcaatgtgggtggacctcattcaacccatttagggcctaaata 127
||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |
Sbjct: 1013 actcagtaaagcctttctcaaggtgagtggacctcattcaacccatttagggcttaaaga 954
Query: 128 aaacaatgggctctgtgcaggaaaatttgctctttctgcaagctgaaaccacagtcttca 187
||||||||||||| | ||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 953 aaacaatgggctccgggcaggaaaatttgctctttctgcaagctgaaaccatagccttca 894
Query: 188 cctacctgaactgataattccagttctcctgggtctccagctttgcaactattgataatg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 cctacctgaactgataattccagttctcctgggtctccagctttgcaactattgataatg 834
Query: 248 gaacctcccagcctcataaaccaataccttgtctctatactctctctctctcccctctct 307
|||||||||||||| |||||| |||||||||||| |||||||||||||||||
Sbjct: 833 gaacctcccagccttataaactaataccttgtctgtatactctctctctctc-------- 782
Query: 308 ctctctctctctctctctctctctctct-c-tctgtgtgtgtgtgtgtgtgtgtgtgtgt 365
||||||||||||| ||| ||| | | |||||||||||||||||||||||||||
Sbjct: 781 -------tctctctctctctgtctgtctgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 729
Query: 366 gtgtgtgtgtgtgtgtgt-----gtgtatccctggatatcatcattcattggtgtcctta 420
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 728 gtgtgtgtgtgtgtgtgttctgagtgtgtccctggatatcatcattcattggtgtcctta 669
Query: 421 ggaaactgatcccccaaaccctccacagatgccaaatctgcagattttttagtatattat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggaaactgatcccccaaaccctccacagatgccaaatctgcagattttttagtatattat 609
Query: 481 atgagatagcatcaagttaactcctgtatactcagtattatccctacagcatttaatatg 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 608 atgagatagcatcaagttaactcctgtatactcagtattattcctacagcatttaatatg 549
Query: 541 tcaaaactagtacagtatatgttctttgtaaataactgctatactgtattgtttggagaa 600
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tcaaaactagtatagtataggttctttgtaaataactgctatactgtattgtttggagaa 489
Query: 601 caatgacaaaatacagtgtacatgtattccatatggaagcaattcttctcaa-cactttt 659
||||||||||| | ||||||||||||||||||||||| |||||| ||||||| || ||||
Sbjct: 488 caatgacaaaaaatagtgtacatgtattccatatggaggcaatttttctcaaacattttt 429
Query: 660 aatctgaagttgaatggatctatg 683
||||||||||||||||||||||||
Sbjct: 428 aatctgaagttgaatggatctatg 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_h10.g1 MSMg01no516_h10.g1 CHROMAT_FILE:
MSMg01no516_h10.g1 PHD_FILE: MSMg01no516_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:12 2005
(656 letters)
>mm_chr2_115916250_115917304
Length = 1055
Score = 1178 bits (609), Expect = 0.0
Identities = 645/659 (97%), Gaps = 4/659 (0%)
Strand = Plus / Plus
Query: 1 ctacatagaacacatcattatctcattcctccctttctccatgacaactgctgtttactt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 198 ctacatagaacacatcattatctcattcctccctttctccattacaactgctgtttactt 257
Query: 61 cagctaactgataagcgtcttaatcagactgaggaattccaccctcacttggtgcccaat 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagctaactgataagcatcttaatcagactgaggaattccaccctcacttggtgcccaat 317
Query: 121 ttactaagatcttaatgttttgaatgaatgttaaaagtttattcttcttcatgtaataag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttactaagatcttaatgttttgaatgaatgttaaaagtttattcttcttcatgtaataag 377
Query: 181 ttacttttttcttccactcttactgtcatattattcttccagtcttttctatattagact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttacttttttcttccactcttactgtcatattattcttccagtcttttctatattagact 437
Query: 241 atacctatgtatctgagctggatttgtgagttgattatggtactgcattgcataactaga 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atacttatgtatctgagctggatttgtgagttgattatggtactgcattgcataactaga 497
Query: 301 tctgactaatattattttgtttctgagttttaaatgtttgaaaaaggagttagttatttc 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 498 tctgactaatattattttgtttctgaattttaaatgtttgaaaaaggagttagttatttc 557
Query: 361 tcctttactcttttcttttttt---ccatttttaattaggtatttagctcatttacattt 417
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 558 tcctttactcttttcttttttttttccatttttaattaggtatttagctcatttacattt 617
Query: 418 ccaatgctataccaaaagtcccccatacccacccaccccatactcttttctttaatatta 477
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 618 ccaatgctataccaaaagtcccccatgcccacccaccccatactcttttctttaatatta 677
Query: 478 aaaaagaatcatctttgccgaattttggtaacagaattttgttaccttcacacgaagaat 537
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 678 aaaaagaatcatctttgcccaattttggtaacagaattttgttaccttcacatgaagaat 737
Query: 538 tatacttgaggaagatttttccccagtttgttctcagacaaaaaatatctgattaatatg 597
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 738 tatacttgaggaagatttttccccagtttgttctcagacaaaaa-tatctgattaatatg 796
Query: 598 atagatttcttannaatattatactgctcctttccaaaataatactggaatactttcaa 656
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ataggtttcttaaaaatattatactgctcctttccaaaataatactggaatactttcaa 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space: 675070
Effective search space used: 675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
