BAC Information

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BAC

Clone NameMSMg01-516M06
Chromosome2 (Build37)
Map Location 121,489,976 - 121,490,600
singlet/doubletsinglet
Overlap geneFrmd5
Upstream geneStard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516M06.T7 (MSMg01no516_m06.b1)MSMg01-516M06.TJ (MSMg01no516_m06.g1)
ACCAG588684AG588685
length761756
length of high quality
(start - end)		634 (49 - 682)543 (77 - 619)
definitionCHROMAT_FILE: MSMg01no516_m06.b1 PHD_FILE: MSMg01no516_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:37 2005CHROMAT_FILE: MSMg01no516_m06.g1 PHD_FILE: MSMg01no516_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGAATTAAAGGCATGGGCCACCATTGCCTGGCTTGAAAGAG
TCCTTTAACATAGAAAAAAAAAAAACCCAAAAACCCAACAACAAACACTA
ATGGCTGTGTCTACCACCATGTGCTAAGGTAAGTGAGCTAACATTTGCTC
AGTGCTGCTGGCTGCTACTCTTGCTTTGTACAGCAGCAGCTTGGGTCTAC
TGCCCTCAGCTGACTGATGAAAACCAGGGCCACTGAGAAGCTATGTGTCT
TCATTTGTGTGACAAACAGGGGCTTGCGAAGTTAAGTGTTCTGGGATGTG
GCTTGGTAATAATAACAGAGCTGACACAGGATGCTCCAGGCCCTCAGTCT
GATGTCCTGGCATCACCACCAAGGAAGGAGAAAGAGAGAAAGGGGGAAGA
TCAGAGGAGGAGGAAGGAGGGGTCACTAGGTGCCAGTGAGGATAGGGAGG
AAGACAGAGAGGAAGTTAGATAATGGGTGTTGAAGTACAGTTAAGTTCTT
GTCTTTTGTACTCTACTGGTGTGACTACGGTTTATAAAAGCCTATTATGT
ATTTTATGAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTTAAGGTTCC
TAATACTATGAAATGATAAGCATAAAATGCTAATTATACTTGATTTGAAA
ATTATCTTTTG

CCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGGGGCGGGGGTAGGAGAAT
TCTTCTGAGAACTGTTATTTTTGTTATGGTTATTTCTCAGAGAACAGCTA
ATATTATTTTGGCAGCCGCAGGCTTAATCATTTTGACTGCTAAAACTATG
TTTTTACATTTGTTTAGTCAGCCAGCTTCCTTATCTGGCTTTGTACTTGG
CCTGCTAGTACAGTTTGGAAAGTCCTTTTCGAAGGGGGAAGGTACTGGGT
GGTCTTGAATTCATTTTGGATATTACACTGTGTGCTAGAGACTTTGATGA
GAAGGACCGGAATTAGTGATGTTCTGGTAAAGAAAAGGCAATACTATGGG
TGTGGTGTCATGTGCCTTTAATCCCAGCATTTGGGAGCAGAAACAAATAG
ATCTCTGTAAATTCAAGGCCTGTTTGACAGACTTATATAGTAAGTTCCAG
GACAGACAGGGCTATGTAGAGAGACTCTGTATAAAAAAAAAAAAAGTCAA
ATAAAAGAAAACCAAAAACAGGTGATACTCCTTCCTGCCAAAACCTAACA
CAATTCAGTCCAGGTTGGAGAGACTAGCAGGGCGTGGGTGTGGTAGGAGT
GGGGCATCTGAAGTAAAGTCATCAGGACATTTCAGGCATATCTGGGAGCT
GGTACCTCCCTGACACGATTGTTATTTTTAAATATTAATTTGACACAATC
TAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_m06.b1 MSMg01no516_m06.b1 CHROMAT_FILE:
MSMg01no516_m06.b1 PHD_FILE: MSMg01no516_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:37 2005
         (634 letters)



>mm_chr2_121489772_121490808
          Length = 1037

 Score = 1193 bits (617), Expect = 0.0
 Identities = 622/625 (99%), Gaps = 3/625 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggaattaaaggcatgggccaccattgcctggcttgaaagagtcctttaacata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggaattaaaggcatgggccaccattgcctggcttgaaagagtcctttaacata 264

                                                                       
Query: 65  gaaaaaaaaaaaa---cccaaaaacccaacaacaaacactaatggctgtgtctaccacca 121
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaaaaaaaaaaaaaacccaaaaacccaacaacaaacactaatggctgtgtctaccacca 324

                                                                       
Query: 122 tgtgctaaggtaagtgagctaacatttgctcagtgctgctggctgctactcttgctttgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgctaaggtaagtgagctaacatttgctcagtgctgctggctgctactcttgctttgt 384

                                                                       
Query: 182 acagcagcagcttgggtctactgccctcagctgactgatgaaaaccagggccactgagaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagcagcagcttgggtctactgccctcagctgactgatgaaaaccagggccactgagaa 444

                                                                       
Query: 242 gctatgtgtcttcatttgtgtgacaaacaggggcttgcgaagttaagtgttctgggatgt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctatgtgtcttcatttgtgtgacaaacaggggcttgcgaagttaagtgttctgggatgt 504

                                                                       
Query: 302 ggcttggtaataataacagagctgacacaggatgctccaggccctcagtctgatgtcctg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcttggtaataataacagagctgacacaggatgctccaggccctcagtctgatgtcctg 564

                                                                       
Query: 362 gcatcaccaccaaggaaggagaaagagagaaagggggaagatcagaggaggaggaaggag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcatcaccaccaaggaaggagaaagagagaaagggggaagatcagaggaggaggaaggag 624

                                                                       
Query: 422 gggtcactaggtgccagtgaggatagggaggaagacagagaggaagttagataatgggtg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggtcactaggtgccagtgaggatagggaggaagacagagaggaagttagataatgggtg 684

                                                                       
Query: 482 ttgaagtacagttaagttcttgtcttttgtactctactggtgtgactacggtttataaaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgaagtacagttaagttcttgtcttttgtactctactggtgtgactacggtttataaaa 744

                                                                       
Query: 542 gcctattatgtattttatgaaggggagagagagagagagagagagagagagagagagaga 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcctattatgtattttatgaaggggagagagagagagagagagagagagagagagagaga 804

                                    
Query: 602 gagagagagagagagagagagagag 626
           |||||||||||||||||||||||||
Sbjct: 805 gagagagagagagagagagagagag 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 124
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1037
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1027
Effective search space:   640848
Effective search space used:   640848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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