Query= MSMg01no517_d18.b1 MSMg01no517_d18.b1 CHROMAT_FILE:
MSMg01no517_d18.b1 PHD_FILE: MSMg01no517_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:15 2005
(673 letters)
>mm_chr2_140995691_140996766
Length = 1076
Score = 1232 bits (637), Expect = 0.0
Identities = 663/673 (98%), Gaps = 5/673 (0%)
Strand = Plus / Minus
Query: 5 gaattccctctggttggcttctcttagtgatagataaaaagagatgctaggattgtaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gaattccctctggttggcttctcttagtgatagataaaaagagatgctaggattgtaaca 817
Query: 65 aacttgtgtttttatacaccactcctaactcaaagtcattcaatacaaagtcttctcaag 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 816 aacttgtgtttttatacaccactactaactcaaagtcattcaatacaaagtcttctcaag 757
Query: 125 acaaatgacat---gggggggggattcacataaaatagaccttcttggaaatcacacctt 181
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 acaaatgacatggggggggggggattcacataaaatagaccttcttggaaatcacacctt 697
Query: 182 catgtatgtatgaaaggctgaagcacattataagaaaattgaaattacttaacacagtat 241
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 696 catgtatgtatgaaaggctgatgcacattataaggaaattgaaattacttaacacagtat 637
Query: 242 tcaccagctatattttgagtagggcatttcagatattttttccaattatcagttcagaat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tcaccagctatattttgagtagggcatttcagatattttttccaattatcagttcagaat 577
Query: 302 attttattttagactagtttctatgaataatctaactttaggaaaattctgcaatacatg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 attttattttagactagtttctatgaataatctaactttaggaaaattctgcaatacatg 517
Query: 362 tctctatttggagatttcaatttgccctacaaaaataagaattaagaaaagcacatttat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 516 tctctatttggagatttcaatttgccctacaaaaataagaattaagaaaagcaca-ttat 458
Query: 422 aaaaactagagttttatatattaaaattttgttatacatccataataaatttgcccaatg 481
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 457 aaaaactagagttttatatattaaaattttgttatacatccataataaatttacccaatg 398
Query: 482 tttcctaagcatataatatgtgggagaaaatacctgacaaaatagtattgaatgccaact 541
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 397 tttcctaagcatataatatgtgggagaaaatacctgacaaaatagtaatgaatgccaact 338
Query: 542 aatactaccaatacaacagatactgcaagttatagagccctgacacattatcatgtaact 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aatactaccaatacaacagatactgcaagttatagagccctgacacattatcatgtaact 278
Query: 602 atgaaaaaaatatgtaatgaagat-aaaaatggaattagacctgtcattaatttattaaa 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 277 atgaaaaaaatatgtaatgaagataaaaaatggaattagacctgtcattaatttattaaa 218
Query: 661 gcccacttgataa 673
|||||||||||||
Sbjct: 217 gcccacttgataa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1076
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1066
Effective search space: 706758
Effective search space used: 706758
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_d18.g1 MSMg01no517_d18.g1 CHROMAT_FILE:
MSMg01no517_d18.g1 PHD_FILE: MSMg01no517_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:15 2005
(669 letters)
>mm_chr2_140835353_140836421
Length = 1069
Score = 1284 bits (664), Expect = 0.0
Identities = 667/668 (99%)
Strand = Plus / Plus
Query: 1 tctttctccttgaattattttttcttaaaaagaatcatttaagccttgtaaattagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttctccttgaattattttttcttaaaaagaatcatttaagccttgtaaattagaaat 260
Query: 61 aatttaagggagcatttggtaattcatgagcacataagcaagcacatgggcacacagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttaagggagcatttggtaattcatgagcacataagcaagcacatgggcacacagtta 320
Query: 121 catacaaacattacatgtggcactatttggtgttctcataccagtttagatatgtctaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catacaaacattacatgtggcactatttggtgttctcataccagtttagatatgtctaca 380
Query: 181 ttctttaaatgttaaaacttaatatggaatatggtgcttgcattttctttataaagtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctttaaatgttaaaacttaatatggaatatggtgcttgcattttctttataaagtttt 440
Query: 241 tcttctgatataattccttgaatatttagaattttagatccgaaaaacatacaagcatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttctgatataattccttgaatatttagaattttagatccgaaaaacatacaagcatat 500
Query: 301 atactgggatggttaatgttaccattgtgacaagctgtacaaccacctgggagatgggtt 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 atactgggatggttaatgttaccaatgtgacaagctgtacaaccacctgggagatgggtt 560
Query: 361 catgagcatgctttgagagattatcttgacttggttcattgtgggcaacgccattcccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgagcatgctttgagagattatcttgacttggttcattgtgggcaacgccattcccta 620
Query: 421 agaaggagatcccagacatactcaaatgaaggggagctgggctgtagcatgctttcatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaggagatcccagacatactcaaatgaaggggagctgggctgtagcatgctttcatta 680
Query: 481 ttctctttcctgatgagggatgccctctaaccagggatttatgtttcctgatgagggatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctctttcctgatgagggatgccctctaaccagggatttatgtttcctgatgagggatg 740
Query: 541 cctgatgagtttcttcctcctgaactaccttccacggtgggctgtgcccttgaatttcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctgatgagtttcttcctcctgaactaccttccacggtgggctgtgcccttgaatttcaa 800
Query: 601 gctagagctaacattcttttctttaagttgccttttttcagagtgctttatcacagcaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gctagagctaacattcttttctttaagttgccttttttcagagtgctttatcacagcaat 860
Query: 661 ggaaaaag 668
||||||||
Sbjct: 861 ggaaaaag 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
