BAC Information

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BAC

Clone NameMSMg01-517E10
Chromosome2 (Build37)
Map Location 30,157,474 - 30,158,098
singlet/doubletsinglet
Overlap geneNup188
Upstream geneCrsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk
Downstream geneSh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517E10.T7 (MSMg01no517_e10.b1)MSMg01-517E10.TJ (MSMg01no517_e10.g1)
ACCAG589066AG589067
length755791
length of high quality
(start - end)		625 (39 - 663)173 (67 - 239)
definitionCHROMAT_FILE: MSMg01no517_e10.b1 PHD_FILE: MSMg01no517_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:18 2005CHROMAT_FILE: MSMg01no517_e10.g1 PHD_FILE: MSMg01no517_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
CTTGTAAGACAGCTTCTTGACTGCCCTGTTTTCCTTCAGACAGTCCTGCA
AGATGAGAGGCAGAGCCAGGCCTTAACCCTGAAGGTAAGTACTGATTGAT
GACTCATTCTTTGGTGGACACTTGTGAGGCAGCTTCTTGGCTTCCTGTCT
CATCCTGTCCGGTCCCATCCTGCCCCCCCTCCCCTCCTCTCCCCTCCTCT
CCTTTTGAGCCAGGGTCTTACTGTGTATCCTTGGACAGCCTGGAACTCAC
TATGAGCCACCATGTGGTTGCCGGGAATTGAACTCAGGACCTCTGGAAGA
GCAGTCAGTGCTTTTAACCTCTGAGCCATCTCTCCAGCTTGCTGGAACTC
ACTTTTTAGACTGCCTCACTATATAGATCCACCTCCCTCTGCTCCTCAGT
ACTGGGTAATAAAGGCATGTGAGACACATCCTCACCTTGCTTCAGCTTTT
AGGTCTTAGCTGAGGCTTTTATTTTTTTCCAGTCAGGGTTTCTCTGTGTA
GCCCTGGCTGTCCTGGAACTCACTCTATAGACCAGGCTGGCCTCAAACTC
AGAAATCCGCCTGCCTCTGCCTCTCATGTTTGGGATCAAAGGCATGCGCC
ACCACACCTGGCTAGCTGAAGCTTCTTAAGCCATGATCCAGCTGAAGAAT
TTCTTCCAGAGTGCCTTCTGCTGCTTTAGGAGGACTGCTCTCCTANGCTC
CGTTA

TTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGAAACCCTGTC
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAATCTCTTTCTT
TTTTTTTTTTTCTTTTACCCTCTCCTCTATCTGTCTTCCTCCTCTTTCTC
GCCTCTCTTTTTTTTTTTTTCCCTTTTTTCCCCTCTCCTCTTTTTCTTTC
TTTTTTTTTTCTTTTGCTCCTCTTTTTCTCTTTTTCCTTCTCTCCCCCCT
TTCTTTTTCCCCCCTTCTTTTTCTTTTTTCTTTCTTTATTTCCTCTTTTT
TTTTTATTCCTTTTCTTTTTCTTTATTTTTCTTTCCTTTTTTTCCTCCTC
TTTTTTTTCCTCTTCCCCTTTTCCTTTTTTTTTCTTTCTTTTTCTTTTTT
CCTTTTCTTCTTTTCCTTTCTCTCTTCTCCTCTTTTTTTTTCTCTTTTTT
ATTTCTTTCCATCTCTTTTTTCCCCTTCTTTTTTTTTTCTTCTTTTTTTT
TCCCCCCCCTCCCTCTTTTCTTTTTTTTTCTTTTCACCTTTTTCATCTCC
CCTTTTTCTTCTTTCCTTCCCTCCCTTCTTTTCTTTTATCTTTTTTCTTT
TCTTTTTGTTTCCTCTTTCCTTCTTTCTCCCTCTTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_e10.b1 MSMg01no517_e10.b1 CHROMAT_FILE:
MSMg01no517_e10.b1 PHD_FILE: MSMg01no517_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:18 2005
         (625 letters)



>mm_chr2_30157270_30158294
          Length = 1025

 Score = 1112 bits (575), Expect = 0.0
 Identities = 612/625 (97%), Gaps = 4/625 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccttgtaagacagcttcttgactgccctgttttccttcagacagtcctgcaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccttgtaagacagcttcttgactgccctgttttccttcagacagtcctgcaag 264

                                                                       
Query: 65  atgagaggcagagccaggccttaaccctgaaggtaagtactgattgatgactcattcttt 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 atgagaggcagagccaggccttaaccctgaaggtaagtactgattgctgactcattcttt 324

                                                                       
Query: 125 ggtggacacttgtgaggcagcttcttggcttcctgtctcatcctgtccggtcccatcctg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 ggtggacacttgtgaggcagcttcttggcttcctgtctcatcctgtccggtcccatcccg 384

                                                                       
Query: 185 --ccccccctcccctcctctcccctcctctccttttgagccagggtcttactgtgtatcc 242
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccccccccctcccctcccctcccctcctctccttttgagccagggtcttactgtgtatcc 444

                                                                       
Query: 243 ttggacagcctggaactcactatgagccaccatgtggttgccgggaattgaactcaggac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggacagcctggaactcactatgagccaccatgtggttgccgggaattgaactcaggac 504

                                                                       
Query: 303 ctctggaagagcagtcagtgcttttaacctctgagccatctctccagcttgctggaactc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctggaagagcagtcagtgcttttaacctctgagccatctctccagcttgctggaactc 564

                                                                       
Query: 363 actttttagactgcctcactatatagatccacctccctctgctcctcagtactgggtaat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actttttagactgcctcactatatagatccacctccctctgctcctcagtactgggtaat 624

                                                                       
Query: 423 aaaggcatgtgagacacatcctcaccttgcttcagcttttaggtcttagctgaggctttt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaggcatgtgagacacatcctcaccttgcttcagcttttaggtcttagctgaggctttt 684

                                                                       
Query: 483 attttttt-cc-agtcagggtttctctgtgtagccctggctgtcctggaactcactctat 540
           |||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 attttttttccgagacagggtttctctgtgtagccctggctgtcctggaactcactctgt 744

                                                                       
Query: 541 agaccaggctggcctcaaactcagaaatccgcctgcctctgcctctcatgtttgggatca 600
           ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct: 745 agaccaggctggcctcaaacttagaaatccacctgcctctgcctctcatgtttgggatta 804

                                    
Query: 601 aaggcatgcgccaccacacctggct 625
           ||||| |||||||||||||||||||
Sbjct: 805 aaggcgtgcgccaccacacctggct 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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