BAC Information

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BAC

Clone NameMSMg01-517I04
Chromosome2 (Build37)
Map Location 167,410,546 - 167,411,145
singlet/doubletsinglet
Overlap genenone
Upstream geneBC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1
Downstream geneUbe2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517I04.T7 (MSMg01no517_i04.b1)MSMg01-517I04.TJ (MSMg01no517_i04.g1)
ACCAG589245AG589246
length744742
length of high quality
(start - end)
---600 (69 - 668)
definitionCHROMAT_FILE: MSMg01no517_i04.b1 PHD_FILE: MSMg01no517_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:37 2005CHROMAT_FILE: MSMg01no517_i04.g1 PHD_FILE: MSMg01no517_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTCTTCTTTTTTTGTAAATAAAATNTCCTTATAATAAAGTATTAAAA
GATTGGGGGCGGGAATACGAATTCGCTATTTCCAAAAAAGGATACCGCGG
AATCATCTATCTGCCGGTCACCCACCCACCCATCCATTCACCCTTCACCC
ACCCAGCCACCCAACACTTGGCTTGCATGGCTCACTCATCCCCTTCAAGT
CTTTTTGCTCCCTTTGCCCAAGGTATTCACCAAATTTTCCCAAATGGAAA
ACTCATTCTGTTCCTCCTAATGGAACCACAAGGTTTCAAAACTTCTCTCA
CAATTCCCAAGGAATGGGGCCACCCAATAAATTACACCCAGCCATCCCCC
CCTTTTTAACCCACCCACATCCCCCCCAATCGGGTACAACCAAACTGGGC
GGGGCCAATTATAAACCCCCCATTTTAAATAAAACCAATTTCCCCCTTTT
ATTTTTNTTTCACCCCAAATGGGGGGCCTTATATTTTAATTTCCCCCCCA
TAAAAAACCCTATTTTTCCTTCTCCTCCCACCTTTATAATAAACAATCAT
TTTTTTTTTTCCCCACCCCCTCCTTCCTTATGCCCCCTATTTTGTTTTGT
TGGGNCCCCCCCCCCCACCTCAATAATTTTACNATATTCCACCCAATCCG
TTGGGGTGGGGGTGGACAATAATAAAAAAACATGATGGGGTTGGGGGTGG
GGGGGGGGGAAATATATTTTTTATTTATCTATATTACTCTACCN
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCAAAGCTCTAGGCCCAGTGCAACCAAGTCCT
CAGCTCTGTCCCCAGCTCCTGACATGTGGCAGGCAGGACAGGACCTGGAG
CTCAGGGCAGTGGGTGCTGCCACCCAAAGGAGCAGGGGTGACCAGAACCT
AACTGGAGGAAAGCTACAGAGTCTAGGGTCTCAGCAGGGTCAGGGCATGG
AGTACCTACTGTGTGCCAGGCTCTACTGTAAGTATTGGATGGTAAAAGAA
GAGCCTTGGGGTTCTGCACAGGCACCCATTGTGAGAGGGACCCAAGTCCC
CAGGACTAGACAATAGATGTCTGGTGACAGAACCATGGCCCTGGATGTCT
GTCCTCTGGGTATGAGCTGGGTACTGCATTTCCCTCAGTACAGTGTGGCC
ACAGCCCATTACACAGTTTGGTAATGTGTGTCTCTCTCTGTGTGTCTGGT
GACTGGGGACAGGCCCTGCTTCACTTTTAGAACCCCTAAGGGGTTTCCCT
GGTTGTGGGCAGGAGGTCTGGTTGTTTGTTTTGAGACAGGGTCTCAGGCT
GCCCAGGTTGGCCTTGAATTCATCATGTGTGGGAGGTGAGCTTTCTATCT
CCCCGCACCCAGACCGCTCCAAGTCTGTGTCTTCCCACCATGCCACCCTC
CCCCATCCTGTATCAGCCATGCCCGGAACTGCCAGTGATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_i04.g1 MSMg01no517_i04.g1 CHROMAT_FILE:
MSMg01no517_i04.g1 PHD_FILE: MSMg01no517_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:37 2005
         (600 letters)



>mm_chr2_167410346_167411345
          Length = 1000

 Score = 1114 bits (576), Expect = 0.0
 Identities = 594/600 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaagctctaggcccagtgcaaccaagtcctcagctctgtccccagctcctgacatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ccaaagctctaggcccagtgcaaccaagtcctcagctctgtccccagctcctgacgtgtg 260

                                                                       
Query: 61  gcaggcaggacaggacctggagctcagggcagtgggtgctgccacccaaaggagcagggg 120
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gcaggcaggacagaacctggagctcagggcagggggtgctgccacccaaaggagcagggg 320

                                                                       
Query: 121 tgaccagaacctaactggaggaaagctacagagtctagggtctcagcagggtcagggcat 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tgaccagaacctaactggaggaaagctacggagtctagggtctcagcagggtcagggcat 380

                                                                       
Query: 181 ggagtacctactgtgtgccaggctctactgtaagtattggatggtaaaagaagagccttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagtacctactgtgtgccaggctctactgtaagtattggatggtaaaagaagagccttg 440

                                                                       
Query: 241 gggttctgcacaggcacccattgtgagagggacccaagtccccaggactagacaatagat 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gggttctgcacaggcacccattgtgagagggacccaagtccccaggaccagacaatagat 500

                                                                       
Query: 301 gtctggtgacagaaccatggccctggatgtctgtcctctgggtatgagctgggtactgca 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctggtgacagagccatggccctggatgtctgtcctctgggtatgagctgggtactgca 560

                                                                       
Query: 361 tttccctcagtacagtgtggccacagcccattacacagtttggtaatgtgtgtctctctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttccctcagtacagtgtggccacagcccattacacagtttggtaatgtgtgtctctctc 620

                                                                       
Query: 421 tgtgtgtctggtgactggggacaggccctgcttcacttttagaacccctaaggggtttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtgtctggtgactggggacaggccctgcttcacttttagaacccctaaggggtttcc 680

                                                                       
Query: 481 ctggttgtgggcaggaggtctggttgtttgttttgagacagggtctcaggctgcccaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggttgtgggcaggaggtctggttgtttgttttgagacagggtctcaggctgcccaggt 740

                                                                       
Query: 541 tggccttgaattcatcatgtgtgggaggtgagctttctatctccccgcacccagaccgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggccttgaattcatcatgtgtgggaggtgagctttctatctccccgcacccagaccgct 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)