BAC Information

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BAC

Clone NameMSMg01-517I14
Chromosome2 (Build37)
Map Location 105,119,989 - 105,197,028
singlet/doubletdoublet
Overlap gene0610012H03Rik
Upstream geneD430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1
Downstream geneRcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517I14.T7 (MSMg01no517_i14.b1)MSMg01-517I14.TJ (MSMg01no517_i14.g1)
ACCAG589265AG589266
length731733
length of high quality
(start - end)		668 (42 - 709)587 (76 - 662)
definitionCHROMAT_FILE: MSMg01no517_i14.b1 PHD_FILE: MSMg01no517_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:39 2005CHROMAT_FILE: MSMg01no517_i14.g1 PHD_FILE: MSMg01no517_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,119,989 - 105,120,653)(105,196,443 - 105,197,028)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTCATACAATTCTAGTTATTAATCATATATATAATTATTATATAAAAT
AATTTATCATATAAAGTTATTTATAACACACACATAAATATCTTTGATTA
GTCTATATTATGAACCTTGTAAATAGTTAAATGAATGGAACCATTCACCA
TACTGAATGCGTTTAAAAATTTAACCTTCAAACAGAAATATCAGGGAATA
AGAATTATTTTTTAGATGTTCATTTGAATTTCTCCCTCCCTCTCTTCAGC
CTCCATCCCTCCCTTTAGAAACGAAATGTGCCATGATGTGCTTTCTAAGA
TAGGTACCGTTCAAGATGAGCCTCCTGATGTTAGCATCTTGTATAGAGTC
CCTTTGCTTTGACTGTAGGCTGGACCTGTGGCTTGCTTTCAGCAGACACA
ATATAGAGAAGGTGTTAGAGCTCACTTCTGAGATGACATAGAAACAAGCT
CTGGCTTCTGTCTTGGAATCCTTTCTCCTTCCTGTCTGAGGGAAGATAAC
TGCTGCACTGTGGGCTACCCTGAGGCACTGTGGGCTAGCCTGTGGAGAAG
CCCCTGTGGCAAAGAGTTGAAGCCTCCTATGTAACAGCTCCTGAGAAACT
AGATTTTGCCAGTTCTCTTGAGTTCCTTCTAAATTGCCTCCTTGCTAAGT
TTGCTTTCGTTTCTTGAGGGATCTGGAGACA

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGAGAGGAGTGGAGACTGTTGACAGG
CTGTGGTGGAGACTTTAGCTGGAAAGCCATGGGCAGATGGGGCTGGAGTG
GCTATCCAGAGCCAACTGAAAAAACAAACAAGCAGAGGAAGCCAGCAAAA
CAAAGGAGGCACAATGAACAGACAAGAGTTAGCATGAGAACAGGAGCCAA
GGTCCTGAGTGACAGTGGGAGACAAGAGTGACCTTCATCCTTACAGTAAG
ACAGCACTAGTCTCTACATCATCAGAGCTAGCCTGAAGAATCCCCCATTC
CTGGCTTTAGAGCACCACAACACAGACCACAGAGAGGAGAAAGAAGACTA
TTAGGAGAGCTTTCATTTCTGGCACCTAGTAGGTGCTAAGTAAACACGAA
TGCGGTTCTTCCCAAGGACTTGATTGCAAGAGCGAAACCACAGCAAACCA
TCTCCACTTGGGTTCTCTCTGTGCCTCCTTCCAATCCTCCAAACCATGAT
CAAACTTGCCCTATAAGATATACTGCACAATTAGTGTGCACCTCTTACCC
TTGCCTAATTAGCTCTTTTATCAATTAAGAATATTTTTCCCATTAAGCCC
AGGGGTTGAGGTGGGGAGAAAGGAGCCCCCTCCTTGATTTCTAAAACCTC
TGAAAAGCCCAGTAAGATAATGTCAGTGATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_i14.b1 MSMg01no517_i14.b1 CHROMAT_FILE:
MSMg01no517_i14.b1 PHD_FILE: MSMg01no517_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:39 2005
         (668 letters)



>mm_chr2_105119786_105120853
          Length = 1068

 Score = 1255 bits (649), Expect = 0.0
 Identities = 661/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctcatacaattctagttattaatcatatatataattattatataaaataatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctcatacaattctagttattaatcatatatataattattatataaaataatt 263

                                                                       
Query: 64  tatcatataaagttatttataacacacacataaatatctttgattagtctatattatgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatcatataaagttatttataacacacacataaatatctttgattagtctatattatgaa 323

                                                                       
Query: 124 ccttgtaaatagttaaatgaatggaaccattcaccatactgaatgcgtttaaaaatttaa 183
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccttgtaaatagttaaatgaatgtaaccattcaccatactgaatgcgtttaaaaatttaa 383

                                                                       
Query: 184 ccttcaaacagaaatatcagggaataagaattattttttagatgttcatttgaatttctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccttcaaacagaaatatcagggaataagaattattttttagatgttcatttgaatttctc 443

                                                                       
Query: 244 cctccctctcttcagcctccatccctccctttagaaacgaaatgtgccatgatgtgcttt 303
           ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 ccttcctctcttcagcctccatccctccctttagaaatgaaatgtgccatgatgtgcttt 503

                                                                       
Query: 304 ctaagataggtaccgttcaagatgagcctcctgatgttagcatcttgtatagagtccctt 363
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctaagataggtaccattcaagatgagcctcctgatgttagcatcttgtatagagtccctt 563

                                                                       
Query: 364 tgctttgactgtaggctggacctgtggcttgctttcagcagacacaatatagagaaggtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgctttgactgtaggctggacctgtggcttgctttcagcagacacaatatagagaaggtg 623

                                                                       
Query: 424 ttagagctcacttctgagatgacatagaaacaagctctggcttctgtcttggaatccttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttagagctcacttctgagatgacatagaaacaagctctggcttctgtcttggaatccttt 683

                                                                       
Query: 484 ctccttcctgtctgagggaagataactgctgcactgtgggctaccctgaggcactgtggg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctccttcctgtctgagggaagataactgctgcactgtgggctaccctgaggcactgtggg 743

                                                                       
Query: 544 ctagcctgtggagaagcccctgtggcaaagagttgaagcctcctatgtaacagctcctga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctagcctgtggagaagcccctgtggcaaagagttgaagcctcctatgtaacagctcctga 803

                                                                       
Query: 604 gaaactagattttgccagttctcttgagttccttctaaattgcctccttgctaagtttgc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaaactagattttgccagttctcttgagttccttctaaattgcctccttgctaagtttgc 863

                
Query: 664 tttcg 668
           |||||
Sbjct: 864 tttcg 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_i14.g1 MSMg01no517_i14.g1 CHROMAT_FILE:
MSMg01no517_i14.g1 PHD_FILE: MSMg01no517_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:39 2005
         (587 letters)



>mm_chr2_105196243_105197229
          Length = 987

 Score = 1125 bits (582), Expect = 0.0
 Identities = 585/586 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaggagtggagactgttgacaggctgtggtggagactttagctggaaagccatgggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gagaggagtggagactgttgacaggctgtggtggagactttagctggaaagccatgggca 727

                                                                       
Query: 61  gatggggctggagtggctatccagagccaactgaaaaaacaaacaagcagaggaagccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gatggggctggagtggctatccagagccaactgaaaaaacaaacaagcagaggaagccag 667

                                                                       
Query: 121 caaaacaaaggaggcacaatgaacagacaagagttagcatgagaacaggagccaaggtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 caaaacaaaggaggcacaatgaacagacaagagttagcatgagaacaggagccaaggtcc 607

                                                                       
Query: 181 tgagtgacagtgggagacaagagtgaccttcatccttacagtaagacagcactagtctct 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 606 tgagtgacagtgggagacaagagtggccttcatccttacagtaagacagcactagtctct 547

                                                                       
Query: 241 acatcatcagagctagcctgaagaatcccccattcctggctttagagcaccacaacacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 acatcatcagagctagcctgaagaatcccccattcctggctttagagcaccacaacacag 487

                                                                       
Query: 301 accacagagaggagaaagaagactattaggagagctttcatttctggcacctagtaggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 accacagagaggagaaagaagactattaggagagctttcatttctggcacctagtaggtg 427

                                                                       
Query: 361 ctaagtaaacacgaatgcggttcttcccaaggacttgattgcaagagcgaaaccacagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctaagtaaacacgaatgcggttcttcccaaggacttgattgcaagagcgaaaccacagca 367

                                                                       
Query: 421 aaccatctccacttgggttctctctgtgcctccttccaatcctccaaaccatgatcaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaccatctccacttgggttctctctgtgcctccttccaatcctccaaaccatgatcaaac 307

                                                                       
Query: 481 ttgccctataagatatactgcacaattagtgtgcacctcttacccttgcctaattagctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttgccctataagatatactgcacaattagtgtgcacctcttacccttgcctaattagctc 247

                                                         
Query: 541 ttttatcaattaagaatatttttcccattaagcccaggggttgagg 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttttatcaattaagaatatttttcccattaagcccaggggttgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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