Query= MSMg01no517_j05.b1 MSMg01no517_j05.b1 CHROMAT_FILE:
MSMg01no517_j05.b1 PHD_FILE: MSMg01no517_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:42 2005
(538 letters)
>mm_chr2_30832137_30833074
Length = 938
Score = 959 bits (496), Expect = 0.0
Identities = 530/554 (95%), Gaps = 20/554 (3%)
Strand = Plus / Plus
Query: 5 gaattctttatatagaccaggctggtctcaaactcagagaactgccagcttctatcaact 64
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttatgtaaaccaggctggtctcaaactcagagaactgccagcttctatcaact 264
Query: 65 gttgagattaaatatgtgtgtcaacacacctgcctccaacgaaaaaattatcacttcatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgagattaaatatgtgtgtcaacacacctgcctccaacgaaaaaattatcacttcatg 324
Query: 125 gaaaaactaagaataaaagtagctggaagttgttgagacagtctcacaattgtctgacct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaaactaagaataaaagtagctggaagttgttgagacagtctcacaattgtctgacct 384
Query: 185 aataggtctcaaatgtgaggtcctcctaactctcagtctccttggtgtgggaatttcagg 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 aataggtctcaaatgtgaggtcctcctaactcttagtctccttggtgtgggaatttcagg 444
Query: 245 catgtgagttctgaaaatctgaactcaaaacaccaatgtgcactggagattatgacaaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catgtgagttctgaaaatctgaactcaaaacaccaatgtgcactggagattatgacaaca 504
Query: 305 gatatcctggggtgaccagatccaaggctctttgaatacagaaaaatggccttatgtttc 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatatcctggggtgacaagatccaaggctctttgaatacagaaaaatggccttatgtttc 564
Query: 365 tttccctctctatttctctcccccacctctttctctttttctctttctctccttccctcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttccctctctatttctctcccccacctctttctctttttctctttctctccttccctcc 624
Query: 425 ctccatccctccctcccagtctctctcattcacacacacacacacacacacacacacac- 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctccatccctccctcccagtctctctcattcacacacacacacacacacacacacacaca 684
Query: 484 -------------------ttgcttgcacagtgaactcagatttaccaagataaaggaaa 524
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cacacacacacacacacacttgcttgcacagtgaactcagatttaccaagataaaggaaa 744
Query: 525 agtgaggaagaatt 538
||||||||||||||
Sbjct: 745 agtgaggaagaatt 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_j05.g1 MSMg01no517_j05.g1 CHROMAT_FILE:
MSMg01no517_j05.g1 PHD_FILE: MSMg01no517_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:42 2005
(485 letters)
>mm_chr2_30997732_30998616
Length = 885
Score = 915 bits (473), Expect = 0.0
Identities = 482/485 (99%)
Strand = Plus / Minus
Query: 1 agagaaagaaagattctgaggagacagttggaagcccccagattctccacagcatgtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agagaaagaaagattctgaggagacagttggaagcccccagattctccacagcatgtgag 626
Query: 61 aaatgacattctgtggagttttggaagagttaatgagatggttcccattctgcgtcagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatgacattctgtggagttttggaagagttaatgagatggttcccattctgcgtcagcc 566
Query: 121 acccactggccagttcacctcctctgttcacatcactaggcctggactggtagacactgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acccactggccagttcacctcctctgttcacatcactaggcctggactggtagacactgc 506
Query: 181 ctccttttggcagctgaggctctcccccagatagaggtaaaacctgttctagaccaccca 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 ctccttttggcagctgaggctctcccccagatagaggtgaaacctgttctagaccaccca 446
Query: 241 gccaaagagtgcagaggctgaatttgaaccctccaaagtccctgtgggcccttcagagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccaaagagtgcagaggctgaatttgaaccctccaaagtccctgtgggcccttcagagat 386
Query: 301 tctgctgtccttcagcagggtaacaacttcactgccgagattcctggccaaataggcaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgctgtccttcagcagggtaacaacttcactgccgagattcctggccaaataggcaga 326
Query: 361 aaaaggcactgattataattctttgggctcacattcccgagttctttccctgggttcctg 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaggcactggttataattctttgggctcacattcccgagttctttccctgggttcctg 266
Query: 421 gatctgctggattgctgttcccttcaacgtcctatgtactctgtgcaccgacgtcacggt 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 gatctgctggattgctgttcccttcaacgtcctatgtacactgtgcaccgacgtcacggt 206
Query: 481 cccag 485
|||||
Sbjct: 205 cccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
