XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
GGTGCTGGGCACAGCTAGTGCCAGTTCCTGGAGCAAGAGAGAACACGAGA
AGCAAGTATAAACAGGCTGGTATAATGAAGAAGGCAGAAGGCATCAGAGG
AGAGAGGAGAGATCACACAGGACCTCGAGGTCCTCAGGAAAGTCTCTGGC
CATTGAAGTGAATGAGAGGAAAGCCACAGGACAGGACAGGGTCAGACTTA
CATAGAGCCACACTTACTTCTCTGTGACAGGGAAAAGGGGAGTGAGGCTC
GAGTTGGGTCTTTGGCAAGACTGCGGCTGAGAGTTAGTAACGTGGTATGG
ACTGGTGTGGACGGTAGGACAGTGAGAGGCGTAGCTCTGGCTGCAGAATC
TTGAGTCAGATTCCAAACTCCATCATGAGGATGAAGGGTGTGAAGGCATC
AGCCAGCGATGGCAGGGTAAGAATATCACCACACAGCCTAGGAGGCTCAA
CCACAGACTTCCAGGCCTAGCCATCTCCAGCTGCCCTCCTGAGGACCTCT
TGCCCATTCTTCTTTCCAAGATCACTCCAGATGTTGAGAGCAGAGAACCT
GAGGCTAGGTGTGTTAGCACACACCTTTAATCCTAGTATGCAGGGGGCAG
AGGCAGGAGGATCTCTGTGAGGCAGAGGCCAGTGTATCGACACAATGAGT
TCTGATAAGCAAGACTAAAATGGAGAGACCTTCCCTTGAACAAAAACAAA
CAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGGGGAAATAAGGAGGCAATGAACTTGAGGTTG
GTCAAAACAGACACTACAGGACGACAGAGTCTCTCCTTGTGTTTCATGGA
GGCAAAGTTATGTTCAAACCAGAAAGCAGAGCAATGGCTGCCTGGGGCAG
GGGTGAGAAGTCAGTCCTATCAGTTAAGGGACTCTGAAATGCACGGTCAG
TCAGGAGAGCGAAACCCAGCAAGGCAAAAACTGCTAGACATCAAAAGCAT
GGCTATCTTAGCAGCCCTCAGCAGACACACAGTCTGAAGAAAAGATTCGA
GAATGGGATTGGAGAGATGGCCTGGTCATTAAGAGCAGAGGACTCAGGTT
TAGTTCTTAGCATCCACATCAAGGAGCTCACAGCCACCTGTAACTCCAGC
TGTAGCGCATCTAATGCCCTCTTCTGGACTCTGCAAGCATCTGCACGTGT
GAGCACACCTATACCCAAACATACACACATACACAGAATTGAAAATAAAA
ATAAGATCTGCTAAAAAAAAAAAAAAAAGTAATAAAGTAGGGCTGGAGAG
ATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCACATGTCCTGAGTTC
AATTCCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGGGATCCGA
TGCCCTCTTCTAGTGTGTCTGAAGATAGCGAAAGCATATTCACATAC

Query= MSMg01no517_k04.b1 MSMg01no517_k04.b1 CHROMAT_FILE:
MSMg01no517_k04.b1 PHD_FILE: MSMg01no517_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:47 2005
         (685 letters)



>mm_chr2_158417625_158418709
          Length = 1085

 Score = 1255 bits (649), Expect = 0.0
 Identities = 673/681 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaggtgctgggcacagctagtgccagttcctggagcaagagagaacacgaga 64
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 205 gaattctttagatgctgggcacagctagtgccagttcctggagcaagagagaacgcaaga 264

                                                                       
Query: 65  agcaagtataaacaggctggtataatgaagaaggcagaaggcatcagaggagagaggaga 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaggtataaacaggctggtataatgaagaaggcagaaggcatcagaggagagaggaga 324

                                                                       
Query: 125 gatcacacaggacctcgaggtcctcaggaaagtctctggccattgaagtgaatgagagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatcacacaggacctcgaggtcctcaggaaagtctctggccattgaagtgaatgagagga 384

                                                                       
Query: 185 aagccacaggacaggacagggtcagacttacatagagccacacttacttctctgtgacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagccacaggacaggacagggtcagacttacatagagccacacttacttctctgtgacag 444

                                                                       
Query: 245 ggaaaaggggagtgaggctcgagttgggtctttggcaagactgcggctgagagttagtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaaaaggggagtgaggctcgagttgggtctttggcaagactgcggctgagagttagtaa 504

                                                                       
Query: 305 cgtggtatggactggtgtggacggtaggacagtgagaggcgtagctctggctgcagaatc 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 cgtggtatggactggtgtggacggtaggacagtgagaggcgtagctctggatgcagaatc 564

                                                                       
Query: 365 ttgagtcagattccaaactccatcatgaggatgaagggtgtgaaggcatcagccagcgat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgagtcagattccaaactccatcatgaggatgaagggtgtgaaggcatcagccagcgat 624

                                                                       
Query: 425 ggcagggtaagaatatcaccacacagcctaggaggctcaaccacagacttccaggcctag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcagggtaagaatatcaccacacagcctaggaggctcaaccacagacttccaggcctag 684

                                                                       
Query: 485 ccatctccagctgccctcctgaggacctcttgcccattcttctttccaagatcactccag 544
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccatctccagctgccctcctaaggacctcttgcccattcttctttccaagatcactccag 744

                                                                       
Query: 545 atgttgagagcagagaacctgaggctaggtgtgttagcacacacctttaatcctagtatg 604
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 745 atgttgagagcagagaacctgaggctaggtgtgttagcacacacttttaatcctagtatg 804

                                                                       
Query: 605 cagggggcagaggcaggaggatctctgtgaggcagaggccagtgtatcgacacaatgagt 664
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caggaggcagaggcaggaggatctctgtgaggcagaggccagtgtatcgacacaatgagt 864

                                
Query: 665 tctgataagcaagactaaaat 685
           |||||||||||||||||||||
Sbjct: 865 tctgataagcaagactaaaat 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_k04.g1 MSMg01no517_k04.g1 CHROMAT_FILE:
MSMg01no517_k04.g1 PHD_FILE: MSMg01no517_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:47 2005
         (582 letters)



>mm_chr2_158552093_158553074
          Length = 982

 Score =  864 bits (447), Expect = 0.0
 Identities = 477/487 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggaaataaggaggcaatgaacttgaggttggtcaaaacagacactacaggacgacag 60
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 487 tgggaaaataagaaggcaatgaacttgaggttggtcaaaacagacactacaggacaaaag 428

                                                                       
Query: 61  agtctctccttgtgtttcatggaggcaaagttatgttcaaaccagaaagcagagcaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agtctctccttgtgtttcatggaggcaaagttatgttcaaaccagaaagcagagcaatgg 368

                                                                       
Query: 121 ctgcctggggcaggggtgagaagtcagtcctatcagttaagggactctgaaatgcacggt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 367 ctgcctggggcaggggtgggaagtcagtcctatcagttaagggactctgaaattcacggt 308

                                                                       
Query: 181 cagtcaggagagcgaaacccagcaaggcaaaaactgctagacatcaaaagcatggctatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cagtcaggagagcgaaacccagcaaggcaaaaactgctagacatcaaaagcatggctatc 248

                                                                       
Query: 241 ttagcagccctcagcagacacacagtctgaagaaaagattcgagaatgggattggagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttagcagccctcagcagacacacagtctgaagaaaagattcgagaatgggattggagaga 188

                                                                       
Query: 301 tggcctggtcattaagagcagaggactcaggtttagttcttagcatccacatcaaggagc 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 187 tggcctggtcattaagagcagaggactcaggtttcgttcttagcatccacatcaaggagc 128

                                                                       
Query: 361 tcacagccacctgtaactccagctgtagcgcatctaatgccctcttctggactctgcaag 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 127 tcacagccacctgtaactccagctgtagcgcatctgatgccctcttctggactctgcaag 68

                                                                       
Query: 421 catctgcacgtgtgagcacacctatacccaaacatacacacatacacagaattgaaaata 480
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 67  catctgcacgtgtgagcacacctatacccaaacacacacacatacacggaattgaaaata 8

                  
Query: 481 aaaataa 487
           |||||||
Sbjct: 7   aaaataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)