Query= MSMg01no517_k13.b1 MSMg01no517_k13.b1 CHROMAT_FILE:
MSMg01no517_k13.b1 PHD_FILE: MSMg01no517_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:49 2005
(713 letters)
>mm_chr2_93960535_93961647
Length = 1113
Score = 1044 bits (540), Expect = 0.0
Identities = 583/602 (96%), Gaps = 9/602 (1%)
Strand = Plus / Minus
Query: 5 gaattccatgcttcaaggtattgtcctcatgacataaacacttcttaaaggccccatgtt 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaattccatgcaaaaaggtattgtcctcatgacataaacacttcttaaaggccccatgtt 543
Query: 65 ggcctactatcatattggacattcaatttcaacacctcaattttacaaagatcaaattta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggcctactatcatattggacattcaatttcaacacctcaattttacaaagatcaaattta 483
Query: 125 aaccatagcataatatagattaagaataaagaggatcgtgtttgtgaagagagtgttacc 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaccatagcataatatagattgagaataaagaggatcgtgtttgtgaagagagtgttacc 423
Query: 185 ttgcaggaagtagacacattccagcatgattggtgtgaggttaagggaaacatgtcaagg 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttgcaggaagtggacacattccagcatgattggtgtgaggttaagggaaacatgtcaagg 363
Query: 245 acttcgtaaaggataagggtaaggggagttcactcattcattcattcattca-------- 296
|||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 actttgtaaaggataagggtaaggggagttcactcattcattcattcattcattcattca 303
Query: 297 ctcattcatccttaaaacgttacttatcatctccttttgaagtcgctggcttgccagttt 356
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 302 ctcattcatccttaaaacgttactaatcatctccttttgaagtcgctggcttgccagttt 243
Query: 357 gactgtggggacagacagacaagactgacaggttttaggcaggaaagtgacatttggatt 416
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gactgtggggacagacagacatgactgacaggttttaggcaggaaagtgacatttggatt 183
Query: 417 tgtactgtggaatgatcacttgagcccaggagagtgactaagggaggaataagaaaaaa- 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgtactgtggaatgatcacttgagcccaggagagtgactaagggaggaataagaaaaaaa 123
Query: 476 cgagttgcagatgcactagaagttgttttaggagatcctgggagagatgaatggtagctt 535
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cgagatgcagatgcactagaagttgttttaggagatcctgggagagatgaatggtagctt 63
Query: 536 tgctaactttatatgtgtattagtaaagagccttgctttttggaaaggcaatgcctgcac 595
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgctaactttatatgcgtattagtaaagagccttgctttttggaaaggcaatgcctgcac 3
Query: 596 at 597
||
Sbjct: 2 at 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no517_k13.g1 MSMg01no517_k13.g1 CHROMAT_FILE:
MSMg01no517_k13.g1 PHD_FILE: MSMg01no517_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:49 2005
(644 letters)
>mm_chr2_93803211_93804254
Length = 1044
Score = 1154 bits (597), Expect = 0.0
Identities = 630/645 (97%), Gaps = 10/645 (1%)
Strand = Plus / Plus
Query: 5 tgcccactgggctgagtttgtgga-----cattatccagttttacacgtggccttgcctg 59
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 tgcccactaggctgagtttgtggagggggcattatccagttttacacgtggccttgcctg 264
Query: 60 gaggccctgggttgggggatggtcattaaagaggatgcaggatagtcatcttctggtcag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaggccctgggttgggggatggtcattaaagaggatgcaggatagtcatcttctggtcag 324
Query: 120 ggctgcagccatgagtatacagagggccacagacatgtgctcagttgagcgctggctatc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggctgcagccatgagtatacagagggccacagacatgtgctcagttgagcgctggctatc 384
Query: 180 tgcagactctgggctcagtgtgtcatctcactaaaataccccctggactcctctgcaggg 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcagactctgggctcagtgtgtaatctcactaaaataccccctggactcctctgcaggg 444
Query: 240 tcctaacaccatacctgctttacacccgtgaccagtggagtttggtgttttgccatggcc 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 tcctaacaccatacctgctttacaccagtgaccagtggagtttggtgttttgccatggcc 504
Query: 300 acccaagtcctgaggcaggaacccaaagtcaggtctgcttgaccttgctgcagcccattg 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 acccaagtcctgaggcaggaacccaaagtcaggtctgctggaccttgctgcagcccattg 564
Query: 360 taccctgtagtctcccttctgacggaaccggaaccagaccagaagtcagatgcctggatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taccctgtagtctcccttctgacggaaccggaaccagaccagaagtcagatgcctggatg 624
Query: 420 gctgaatccgctcagtttctcacaacctgtggccttgaacctgtcatacttctcagtagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctgaatccgctcagtttctcacaacctgtggccttgaacctgtcatacttctcagtagc 684
Query: 480 cccgagctgcagcaacccatctatgaggtcaggaggccactcctagattctctggaccct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cccgagctgcagcaacccatctatgaggtcaggaggccactcctagattctctggaccct 744
Query: 540 tctaagtctgtaatcctggggtggggggagagggtgcagggtgcagggttaaagagaacc 599
|||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||
Sbjct: 745 tctaagtctgtaatcctgggatgggggg-g-ggg---agggtgcagggttaaagagaacc 799
Query: 600 atttgtgagaggcaggtgctttctctcagccaagagtggccagta 644
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atttgtgagaggcaggtgctttctctcagccaagagtggccagta 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
