Query= MSMg01no518_g21.b1 MSMg01no518_g21.b1 CHROMAT_FILE:
MSMg01no518_g21.b1 PHD_FILE: MSMg01no518_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:50 2005
(678 letters)
>mm_chr2_11596883_11597960
Length = 1078
Score = 1015 bits (525), Expect = 0.0
Identities = 525/525 (100%)
Strand = Plus / Minus
Query: 154 ccagtatgaagagacaaagatcatctccctggtcttaaagagccacacctgaatctctaa 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 ccagtatgaagagacaaagatcatctccctggtcttaaagagccacacctgaatctctaa 1019
Query: 214 agaaggccttctctcttccagccactccattgtcccagcactcactctgaatcaaaccgg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 agaaggccttctctcttccagccactccattgtcccagcactcactctgaatcaaaccgg 959
Query: 274 gtttcacttgggctctgccttccccttcctgcctggcatatgggcaccctaagggggaag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 gtttcacttgggctctgccttccccttcctgcctggcatatgggcaccctaagggggaag 899
Query: 334 tgtggactgggggacccacattcctgactcacagtgatccacctgtggcacccaggtata 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 tgtggactgggggacccacattcctgactcacagtgatccacctgtggcacccaggtata 839
Query: 394 cacaggtgactgggaaacatggcatctatcccagactctgccgtttgcccttcagagaaa 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 cacaggtgactgggaaacatggcatctatcccagactctgccgtttgcccttcagagaaa 779
Query: 454 agatgagctgtgtaccatcattctgcctttccttctgcctcccctgagcagcacgtcatc 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 agatgagctgtgtaccatcattctgcctttccttctgcctcccctgagcagcacgtcatc 719
Query: 514 tgtgcccaggcaccccagccaggcagggctcagtagggcatcttggatagggccagcaca 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tgtgcccaggcaccccagccaggcagggctcagtagggcatcttggatagggccagcaca 659
Query: 574 cctagactagcactgacctctccatactcatatacatattggcattggatacaacacatt 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cctagactagcactgacctctccatactcatatacatattggcattggatacaacacatt 599
Query: 634 cctagaaaaaaatgcaagattctctcctagaaaatccttgtgtgc 678
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cctagaaaaaaatgcaagattctctcctagaaaatccttgtgtgc 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_g21.g1 MSMg01no518_g21.g1 CHROMAT_FILE:
MSMg01no518_g21.g1 PHD_FILE: MSMg01no518_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:50 2005
(560 letters)
>mm_chr2_11483114_11484073
Length = 960
Score = 982 bits (508), Expect = 0.0
Identities = 549/566 (96%), Gaps = 6/566 (1%)
Strand = Plus / Plus
Query: 1 tgttcaactctcagttggtaagcccagaagacagacaagtttcttgctccacccacactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tgttcaactctcagttggtaagcccagaagacagacaagtttcttgctccacccacactt 254
Query: 61 agctatggtatctatcccctactggccactcctgattcatacctttcccaataaaaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agctatggtatctatcccctactggccactcctgattcatacctttcccaataaaaagct 314
Query: 121 ataatactaagtggccatctgcagttctgtgagttattctagtacttgaacatggaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ataatactaagtggccatctgcagttctgtgagttattctagtacttgaacatggaaata 374
Query: 181 aatgaaggcagagttttcagaagagtgagacactggatctttataaccacgttagacaga 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 375 aatgaaggcagagttttcagaagagtgggacactggatctttataaccacgttggacaga 434
Query: 241 agaatggataggctcagtgctcaacactttccttccttttttttttctccccactctcca 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agaataaataggctcagtgctcaacactttccttccttttttttttctccccactctcca 494
Query: 301 acactttccttttttgtccttttccatttatttcacgtgtgtg------tgtgtgtgtgt 354
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 495 acactttccttttttgtccttttccatttatttcacgtgtgtgagtgtgtgtgtgtgtgt 554
Query: 355 gtgtgtagacactcacgtgccacagccatacagaagaagagcatagcttgtgggagtcgg 414
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 555 gtgtgtagacactcacgtgccacagccatacagaataagagcatagcttgtgggagtctg 614
Query: 415 ctctcttcactgtgtgaggtccagaaatcaaattcaagtcatcagagtagatagcaagtg 474
||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 615 ctctctttactgtgtgaggtccagggatcaaattcaagccatcagagtagatagcaagtg 674
Query: 475 acttttcccattgagttgtcttaccaacgtccaagtactttaaagtattcattatatgcc 534
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 675 acttttcccattgagttgtcttaccaatgtccaagtactttaaagtattcattatatgcc 734
Query: 535 tatgcccatgtaccatgtttgtataa 560
||||||||||||||||||||||||||
Sbjct: 735 tatgcccatgtaccatgtttgtataa 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
