BAC Information

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BAC

Clone NameMSMg01-518H11
Chromosome2 (Build37)
Map Location 77,049,235 - 77,123,866
singlet/doubletdoublet
Overlap geneSestd1
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik
Downstream geneLOC623706, LOC667906, Zfp533, BC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518H11.T7 (MSMg01no518_h11.b1)MSMg01-518H11.TJ (MSMg01no518_h11.g1)
ACCAG589968AG589969
length778777
length of high quality
(start - end)		656 (48 - 703)564 (76 - 639)
definitionCHROMAT_FILE: MSMg01no518_h11.b1 PHD_FILE: MSMg01no518_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:52 2005CHROMAT_FILE: MSMg01no518_h11.g1 PHD_FILE: MSMg01no518_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,049,235 - 77,049,886)(77,123,303 - 77,123,866)
sequence
NCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTGCAATCCAAGACTCCAAATCTACTCCCTTATTATGCTATT
CTCTTACCACCCCAAAAATGCCAGCCTCCTGCAAACCTTCTGTGTGGTAA
AATCTGCCATGTTTCTAGAAAATGGAGTCAACTGCTACTTCCTCCCACCA
GGCCTTGCCGACTCTGGCAATCACAGAAACAATCGGACGAGAAACGCCCA
AAGCACTGTGGTTCTATCCTTGTGATAGTTAACGCTTTTTCTCCTTACCT
CTATCAGCAAACAAAACTGAATCTACTTTTATAACCTGTATACAATTTAG
CACCATGCCTAAATATCTACCAAGAGAACCAATGACTCAAGATTTTTAAA
GAACACTTCAGTATTTCAAGCTGCTTATACTCGTTTTTAGAGGTTTCATT
TTTAGTTATGTGTACATGTATGTCTGGGGATGAGTGTATACATATAAGCA
CAGGTACTATGGATGACAGAAAAGCATATAGCACCAGATCCCCTGGAGCT
GGAGTGACAGGTAACTGGGAGCCCTTGAAGTGGGTACTGGGAACTGAACT
CAAGTCTTCTGCAAGAGCAGTATACTCTCTTACTGCTAAGTCATTTCTCT
AGCTGAGCCAGCTTGTATCTTCAAATAAAAATTATTTAAAGGTTTATTTT
AATTGTTCAGTAGATAAAAATCTACCATAATCTAATGAACAGAAATGTCT
CATATATGTTTTTGGATATTTCAGACAT

NCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCATCCTTCTACTTGAATCTAGT
GTCAATTCCTTTGTCACTTGTGGAGTTTGACCTCAGAGACAGCCATTTCA
ACATACACATGACACTTAATGCTTATGGGAAGAGATTGTATTGGAGATGG
AGACTCTTGGTCTCATTAGTTTGCTTTAGCCTACTATTCAATTAATGTAT
TGTATATTGTCAGAAGTTTTTGCAACAATTTGCTCTAACATTCGATCATC
ATTTGGCGTCCTTTATTATGTACAGCTAGAGCTTATATTAAGGAAGAGGG
AAGGATGTTATTCATTGAAATTACAAATTTTTCTCCTGTCCGAAATTTTA
TTTCAGCTCCCAATACCTTTATAGCACTGTTGAGGTTTAAGGGGAATACT
TTGTGTTATGTCTAAGTTATTTATTTATGAACATATAGATGATTAGAAGC
ATCTATACACCCTCTGCTCATGTCAGCTAGTAAGCAAGGTGCTGGATCCC
AGTCTGTGATGTTCTGTTTACTAACTCTGGAGTTGGGTTTGCTGCCTCTC
TGTGTTGCCTCTCTGTGGAAGAAGATGACTTTGGAATAGAGGAAAAGGTG
GTTCCAGCTTCAAAAAAATGTCCCATGACCTCATGACCAGAAAAAGACGT
CAGTCTTGTCTCAAAGGTTTTGATATTACTTTGTAGTTTTATTTGGCTGT
TGAAGAAAAAAGAGAGAGAGAGAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_h11.b1 MSMg01no518_h11.b1 CHROMAT_FILE:
MSMg01no518_h11.b1 PHD_FILE: MSMg01no518_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:52 2005
         (656 letters)



>mm_chr2_77049031_77050086
          Length = 1056

 Score = 1230 bits (636), Expect = 0.0
 Identities = 648/652 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgcaatccaagactccaaatctactcccttattatgctattctcttaccacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgcaatccaagactccaaatctactcccttattatgctattctcttaccacc 264

                                                                       
Query: 65  ccaaaaatgccagcctcctgcaaaccttctgtgtggtaaaatctgccatgtttctagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaaaaatgccagcctcctgcaaaccttctgtgtggtaaaatctgccatgtttctagaaa 324

                                                                       
Query: 125 atggagtcaactgctacttcctcccaccaggccttgccgactctggcaatcacagaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggagtcaactgctacttcctcccaccaggccttgccgactctggcaatcacagaaaca 384

                                                                       
Query: 185 atcggacgagaaacgcccaaagcactgtggttctatccttgtgatagttaacgctttttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcggacgagaaacgcccaaagcactgtggttctatccttgtgatagttaacgctttttc 444

                                                                       
Query: 245 tccttacctctatcagcaaacaaaactgaatctacttttataacctgtatacaatttagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccttacctctatcagcaaacaaaactgaatctacttttataacctgtatacaatttagc 504

                                                                       
Query: 305 accatgcctaaatatctaccaagagaaccaatgactcaagatttttaaagaacacttcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accatgcctaaatatctaccaagagaaccaatgactcaagatttttaaagaacacttcag 564

                                                                       
Query: 365 tatttcaagctgcttatactcgtttttagaggtttcatttttagttatgtgtacatgtat 424
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 tatttcaagctgcttatacttgtttttagaggtttcatttttagttatgtgtacatgtgt 624

                                                                       
Query: 425 gtctggggatgagtgtatacatataagcacaggtactatggatgacagaaaagcatatag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctggggatgagtgtatacatataagcacaggtactatggatgacagaaaagcatatag 684

                                                                       
Query: 485 caccagatcccctggagctggagtgacaggtaactgggagcccttgaagtgggtactggg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caccagatcccctggagctggagtgacaggtaactgggagcccttgaagtgggtactggg 744

                                                                       
Query: 545 aactgaactcaagtcttctgcaagagcagtatactctcttactgctaagtcatttctcta 604
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 745 aactgaactcaagtcttctgcaagaacagtatactctcttactgctaagccatttctcta 804

                                                               
Query: 605 gctgagccagcttgtatcttcaaataaaaattatttaaaggtttattttaat 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gctgagccagcttgtatcttcaaataaaaattatttaaaggtttattttaat 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_h11.g1 MSMg01no518_h11.g1 CHROMAT_FILE:
MSMg01no518_h11.g1 PHD_FILE: MSMg01no518_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:52 2005
         (564 letters)



>mm_chr2_77123103_77124066
          Length = 964

 Score = 1052 bits (544), Expect = 0.0
 Identities = 559/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcatccttctacttgaatctagtgtcaattcctttgtcacttgtggagtttgacctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cttcatccttctacttgaatctagtgtcaattcctttgtcacttgtggagtttgacctca 705

                                                                       
Query: 61  gagacagccatttcaacatacacatgacacttaatgcttatgggaagagattgtattgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gagacagccatttcaacatacacatgacacttaatgcttatgggaagagattgtattgga 645

                                                                       
Query: 121 gatggagactcttggtctcattagtttgctttagcctactattcaattaatgtattgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gatggagactcttggtctcattagtttgctttagcctactattcaattaatgtattgtat 585

                                                                       
Query: 181 attgtcagaagtttttgcaacaatttgctctaacattcgatcatcatttggcgtccttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 attgtcagaagtttttgcaacaatttgctctaacattcgatcatcatttggcgtccttta 525

                                                                       
Query: 241 ttatgtacagctagagcttatattaaggaagagggaaggatgttattcattgaaattaca 300
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 524 ttatgtacagctagagcttatattaaggaagaggaaaggatattattcattgaaattaca 465

                                                                       
Query: 301 aatttttctcctgtccgaaattttatttcagctcccaatacctttatagcactgttgagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aatttttctcctgtccgaaattttatttcagctcccaatacctttatagcactgttgagg 405

                                                                       
Query: 361 tttaaggggaatactttgtgttatgtctaagttatttatttatgaacatatagatgatta 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 404 tttaaggggaatactttgtgttatgcctaagttatttatttatgaacatctagatgatta 345

                                                                       
Query: 421 gaagcatctatacaccctctgctcatgtcagctagtaagcaaggtgctggatcccagtct 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 344 gaagcatctatacaccctctgctcatgtcagctagtaagcagggtgctggatcccagtct 285

                                                                       
Query: 481 gtgatgttctgtttactaactctggagttgggtttgctgcctctctgtgttgcctctctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtgatgttctgtttactaactctggagttgggtttgctgcctctctgtgttgcctctctg 225

                                   
Query: 541 tggaagaagatgactttggaatag 564
           ||||||||||||||||||||||||
Sbjct: 224 tggaagaagatgactttggaatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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