Query= MSMg01no518_m02.b1 MSMg01no518_m02.b1 CHROMAT_FILE:
MSMg01no518_m02.b1 PHD_FILE: MSMg01no518_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:15 2005
(610 letters)
>mm_chr2_43996358_43997365
Length = 1008
Score = 1079 bits (558), Expect = 0.0
Identities = 594/606 (98%), Gaps = 2/606 (0%)
Strand = Plus / Plus
Query: 5 gaattctaagcatgctaaacaagctacatagtcaacataggtctagcatgtcaagtggag 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaagcaagttaaacaagctacatagtcaacataggtctagcatgtcaagtggag 264
Query: 65 ataagccccatctgcaaataaagcaaagatattggtatagacaatggagttgagtggctc 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataagccccatccgcaaataaagcaaagatattggtatagacaatggagttgagtggctc 324
Query: 125 cgatctttcagaggtggctggaagatagatactgtgagaagaaggatctttgatcagctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgatctttcagaggtggctggaagatagatactgtgagaagaaggatctttgatcagctc 384
Query: 185 agagtcctcatggcccaatcacctctcagtacgacccccaactggggaaatggcactttc 244
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 agagtcctcatggcccaatcacctctcagtacgacccgcaactggggaaatggcactttt 444
Query: 245 aataaatgaatcttcagaggacggtttaaatccaagccactatcccataatcataaatac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aataaatgaatcttcagaggacggtttaaatccaagccactatcccataatcataaatac 504
Query: 305 gaaaatgctgctcaaaaatcatctgtcttactctaaattaaaggcaagggcccagttcag 364
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaatgctgctcaaaaattatctgtcttactctaaattaaaggcaagggcccagttcag 564
Query: 365 cgttgtgatctcagagcccagttcagcgttagttcagagagatgccctctgaaacaaatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgttgtgatctcagagcccagttcagcgttagttcagagagatgccctctgaaacaaatg 624
Query: 425 gatcttcaaaaatatgagtctgaaaattattatctctaccattctcttatagaaactcac 484
|||||| ||||| |||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct: 625 gatctt-aaaaa-atgagtctgagaactattatctctaccatcctcttatagaaactcac 682
Query: 485 atatggcatagctcaaacaaataaaaacactttaaatcctgtcttaaattcagtttaact 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atatggcatagctcaaacaaataaaaacactttaaatcctgtcttaaattcagtttaact 742
Query: 545 ttgtttaatttgatgttgctggccattttgaacatgagccctgtttcctgctgtatctgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttgtttaatttgatgttgctggccattttgaacatgagccctgtttcctgctgtatctgt 802
Query: 605 tgaaca 610
||||||
Sbjct: 803 tgaaca 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1008
Length adjustment: 10
Effective length of query: 600
Effective length of database: 998
Effective search space: 598800
Effective search space used: 598800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_m02.g1 MSMg01no518_m02.g1 CHROMAT_FILE:
MSMg01no518_m02.g1 PHD_FILE: MSMg01no518_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:15 2005
(676 letters)
>mm_chr2_44194791_44195866
Length = 1076
Score = 1284 bits (664), Expect = 0.0
Identities = 673/676 (99%)
Strand = Plus / Minus
Query: 1 caaaatgtcaattaaaaaagacacaaagtgggcgttggagaggaggtacatcttctattc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 876 caaaatgtcaattaaaaaagacacaaagtgggtgttggagaggaggtacatcttctattc 817
Query: 61 ttggctaggtatgttgcaagagaggcttttaagcgtgtttgtaagggacagcctaagaaa 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 816 ttggctaggtatgttgcaagagaggcttttaagcgggtttgtaagggacagcctaagaaa 757
Query: 121 atggcttagcataacatattcgctcatttccagtaactttccttcacttagatggagcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 atggcttagcataacatattcgctcatttccagtaactttccttcacttagatggagcat 697
Query: 181 agaaagttctgattaagcaaatgttctggttaaaaacacttatcatcatatgcggattag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agaaagttctgattaagcaaatgttctggttaaaaacacttatcatcatatgcggattag 637
Query: 241 cagtaatcaaatagcacaattaatactaaaattacaaggacacagaattagcatcctttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cagtaatcaaatagcacaattaatactaaaattacaaggacacagaattagcatcctttg 577
Query: 301 ataattcacaaggaacttttgcatcttcaagctgtcattaagtactagagttatctctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ataattcacaaggaacttttgcatcttcaagctgtcattaagtactagagttatctctgt 517
Query: 361 ggcgagagtgtggttattagataaatggatgactattagaagtttctgactggtgaaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggcgagagtgtggttattagataaatggatgactattagaagtttctgactggtgaaatg 457
Query: 421 gcagctaattgaaatttgtttggatccttttgggctagagttatttattgaataatgcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gcagctaattgaaatttgtttggatccttttgggctagagttatttattgaataatgcta 397
Query: 481 ttggatgatactccttaagtctgggtaatgctgctaaccctgattttgctggttactttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttggatgatactccttaagtctgggtaatgctgctaaccctgattttgctggttactttc 337
Query: 541 taatctgcctgtttgctacttagtggatcttgttgtgcttgattctaggttgaatcattg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 taatctgcctgtttgctacttagtggatcttgttgtgcttgattctaggttgaatcattg 277
Query: 601 aattctttccttcttggttgattctgaagtttcttgaggaaggcattcacctttgtgctt 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aattctttccttcttggctgattctgaagtttcttgaggaaggcattcacctttgtgctt 217
Query: 661 tgaataatttacatta 676
||||||||||||||||
Sbjct: 216 tgaataatttacatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
