BAC Information

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BAC

Clone NameMSMg01-519B18
Chromosome2 (Build37)
Map Location 135,551,022 - 135,551,623
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627897, LOC433478, Plcb1, LOC100043487, LOC100043786, LOC100043788
Downstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519B18.T7 (MSMg01no519_b18.b1)MSMg01-519B18.TJ (MSMg01no519_b18.g1)
ACCAG590460AG590461
length752762
length of high quality
(start - end)
655 (35 - 689)602 (66 - 667)
definitionCHROMAT_FILE: MSMg01no519_b18.b1 PHD_FILE: MSMg01no519_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:44 2005CHROMAT_FILE: MSMg01no519_b18.g1 PHD_FILE: MSMg01no519_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCATC
TGCTTCAGAACTACTAAGAGCTGGCTTCCTGAGCTCATCTAGTGACGAGT
ATCTCCTAGAGACCTCCGCTAATCGATCTTTTTTCTTTTCTTTTTTCTTT
TCCTTCCTTCTAATCTCTCCCCAGGTATTCTTACCTGACCTAAACTTTTC
CTCGGGTTCAAGACCCTTGGAAAGGCCTGTATACTTATTTTGTGTACCAT
ATTTTCTCTTTGCTCCTATTCTCTCTCCCCGCTTTACTTCTGATAGATTG
CCCTGAATTTCATCCAGAATTTTCAGCCCTATCTTAATCACCTGATAACA
TGTGAAAAGGAACAAAAGGGCTCCTAACACTAGAAAAAATTCAAGGCCAA
ACATTTTCCACTTTACTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGT
TCAAGATCAGACTTACCTCGTAAAGCTGTACTCACTGGTACTCTCGTTCC
CCAGCTGAAAAGTTCTGAATTCATGCAGTTGAATCCTTCTTAACAGTCTG
CTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGA
GGGATCTTCCCTGCGCCGGTCCCGAGTTTTCTTGTATTTTTTCGTCCCGG
ATTTCAGCACCAATTCTTAATAGCGTTCTCACGACCGGCCAGGAAAGACT
CAACAGACCAGAATCTTCTGCGGCAAAACTTTATGCTTACATCTTTTGGA
GC
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGCCCACTGAGGGCAGCACCATTCCTAGGCAGGTG
GGTGAAGCAGTATTCAGCATTCTTCTGTGGCCTCTGCTTCAACTTCTTGG
CTTTGAGTTCCTGCTGCGGCTTCCCTAAACAATGGCCTGTCACCTGTAAA
ATGTTCTAAATCTATTCCTTTCCAATTTGCCTTGGGTCATAGTGTTTGTC
ACACAAACAAAAATCAAACTAGAACATCTGAGGTGGGTGTTATCTGGGCC
GGAACAGGAGTGACGGGAAGGGGTTATGACAAACATTTGGGGAGTGCTCT
AGGCAGGGGAAACTGCAAGAAGGAAATGAGATTGGGAAGTTGAGCAACTG
CCATGCTGGCTGAGACACAGCAGGAACAAAACGTGAAGGCTGGCAGTTTG
TAAGGTTTGAAAGATATAGCAAGTCTAATGCTCTTTAGAAATGATGGAAA
CAGGCAAAGGGCTGTGTTAATATGCTGCATCTCAGACTTTTAGGTTTGTA
AAGTGCACTTCATAATCTTGCTGAAATACAATACCAAAGTGTGTCTAGAG
ACTGTGCACGCTAGACTTCTGAGGATTGCAGGTGTTCCTGATGTATGTGT
GGACCACACTCTTGAGTGGCAAAGTGTTTGAAGACAGGGACACAAGACTT
GCTATTACCCTGTGTATGCAGAGAAACCAGGTGCTAGGTCAGTAGCAGAA
TAACCCAGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_b18.g1 MSMg01no519_b18.g1 CHROMAT_FILE:
MSMg01no519_b18.g1 PHD_FILE: MSMg01no519_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:44 2005
         (602 letters)



>mm_chr2_135550822_135551823
          Length = 1002

 Score = 1118 bits (578), Expect = 0.0
 Identities = 596/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcccactgagggcagcaccattcctaggcaggtgggtgaagcagtattcagcattcttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agcccactgagggcagcaccattcctaggcaggtgggtgaagcagtattcagcatttttc 260

                                                                       
Query: 61  tgtggcctctgcttcaacttcttggctttgagttcctgctgcggcttccctaaacaatgg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tgtggcctctgcttcaacttcttggctttgagttcttgctgcggcttccctaaacaatgg 320

                                                                       
Query: 121 cctgtcacctgtaaaatgttctaaatctattcctttccaatttgccttgggtcatagtgt 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtcacctgtaaaatgttctaaatccattcctttccaatttgccttgggtcatagtgt 380

                                                                       
Query: 181 ttgtcacacaaacaaaaatcaaactagaacatctgaggtgggtgttatctgggccggaac 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ttgtcacacaaacaaaaatcaaactagaacatctgaggtggatgttatctgggccggaac 440

                                                                       
Query: 241 aggagtgacgggaaggggttatgacaaacatttggggagtgctctaggcaggggaaactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggagtgacgggaaggggttatgacaaacatttggggagtgctctaggcaggggaaactg 500

                                                                       
Query: 301 caagaaggaaatgagattgggaagttgagcaactgccatgctggctgagacacagcagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagaaggaaatgagattgggaagttgagcaactgccatgctggctgagacacagcagga 560

                                                                       
Query: 361 acaaaacgtgaaggctggcagtttgtaaggtttgaaagatatagcaagtctaatgctctt 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 acaaaacgtgaaggctggcagtttgtaaggtttgaaagatgtagcaagtctaatgctctt 620

                                                                       
Query: 421 tagaaatgatggaaacaggcaaagggctgtgttaatatgctgcatctcagacttttaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaaatgatggaaacaggcaaagggctgtgttaatatgctgcatctcagacttttaggt 680

                                                                       
Query: 481 ttgtaaagtgcacttcataatcttgctgaaatacaataccaaagtgtgtctagagactgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgtaaagtgcacttcataatcttgctgaaatacaataccaaagtgtgtctagagactgt 740

                                                                       
Query: 541 gcacgctagacttctgaggattgcaggtgttcctgatgtatgtgtggaccacactcttga 600
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcatgctagacttctgaggattgcaggtgttcctgatgtatgtgtggaccacactcttga 800

             
Query: 601 gt 602
           ||
Sbjct: 801 gt 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)