BAC Information

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BAC

Clone NameMSMg01-519F17
Chromosome2 (Build37)
Map Location 145,207,908 - 145,360,845
singlet/doubletdoublet
Overlap geneSlc24a3, LOC627312
Upstream geneCsrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneOTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519F17.T7 (MSMg01no519_f17.b1)MSMg01-519F17.TJ (MSMg01no519_f17.g1)
ACCAG590650AG590651
length778764
length of high quality
(start - end)		627 (33 - 659)667 (64 - 730)
definitionCHROMAT_FILE: MSMg01no519_f17.b1 PHD_FILE: MSMg01no519_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:03 2005CHROMAT_FILE: MSMg01no519_f17.g1 PHD_FILE: MSMg01no519_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,360,358 - 145,360,845)(145,207,908 - 145,208,570)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGATTT
TACTTGGTCAGATGAGGCTTACAGTTTAATTTGGGGGCATTATACAAGTC
TGCCCAGTACTGATGGGAGAAGAAACAGTGGGTTCAGTGTCCTGGGTGAC
ACTGAAAAGCAGGTAGACTTCAGTTTTTGTAATAAAGTTCTCAAGAATCT
ACCTGGATAGAGAAGAGCAATGGCTTCCTAAAGTCCTATCCTTATACCAG
GGGCATTGTGGGAGTTTGGTGTTGAGTGGGTGGGTGAGAGCGCTCCTAGA
CCAACAACTGACAGCCATTGCTGAGTTCTCTGTTTCCCCATGTGTAAAAT
GTGTGCAATGACAAGCTGTCCTCAAGGGATTCTAGAAAATTCTAAGGAAA
GACTGTATGAAAACAACACAGAACTGCAGCACACAATAGTCCCCAATGTG
TGGTGCAGATAATTATATTTTTAAATAACACTGCTAATTGTCTATTTCAA
GTTTCATTACTAGTATAAAGTATGACTAAAACTTACCTGCTTTTACTCAC
ACTTCGATAATCTTATTTAGAGTAAATTGTGTTAAGTACACTCTAGATTT
ATACACCCACATAGTGATATGATTTCATGAAACCAATTATTCATGTGGAA
CACTGACCGTATTGTTCTGGTTAAGAAAAGCTAACTCAATCCCATTACTC
AGAAAAAATTCAAGCACTTCATACTTCGTGAAGTCCAGCTTGAAGGATGC
TCAAATACTATATAGTTGTATTGCCAGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTCATGCTTAACAGGTAGGGAAAGAGAGAAAATGGG
GGATCGGGTGACAAGGGAAATTAGACCAAGAAAGCATGCATATAATTTCT
GTCCCTGAATCACTGGCCAAAACTGAACTACCTCACTAAACACCACAAGC
TTAATGACTTCAATATCTAGTATGTAGATTTTGCTGAAATCACGGCTAAT
TAACTCTGACTTAACTGTTTGAGAGCTGAAATAGGGTCACAAAACGTTGA
CATCCTGAAATGAGCTATGTCTTAAAAAGGTGAGATTTGGTGGCAATGAA
TATAAACCCGTGACCTTAGGTGAGGGGGAGCCTTTTTCAGGTGCATGGGA
TGAAGAGATGTCTTAAGAGCCCTGTGATTTGGGGTTTCCTTAGGTAGTGT
GCTTATGGGCTCTCATATCAGCATAGTTTGCTAATCCTGAGGCAATAGTG
AGTTCGACTAGGCCTCACCCACCACTCAGGAGTTCTGAGCTTGTGTACAG
GTCACCAATGACTGACTCAAATGTGAACCTTACCATATAGCAGTATAACA
TTCAAAAGTCGGTTGCCTCTTTCCACAGGGAGGCACTACTTGTATCAGTC
TTCCCAGGAAGCTGCCAAGGAATTAATGAGATAATCTCTGTGTGTTAGTC
AGCTTTGCACTGCTATAACAGAATACCACAGACCAGAGCATCTATTAAAA
AAATAGAACTGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_f17.b1 MSMg01no519_f17.b1 CHROMAT_FILE:
MSMg01no519_f17.b1 PHD_FILE: MSMg01no519_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:03 2005
         (627 letters)



>mm_chr2_145360358_145361384
          Length = 1027

 Score =  936 bits (484), Expect = 0.0
 Identities = 487/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggattttacttggtcagatgaggcttacagtttaatttgggggcattataca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gaattccaggattttacttggtcagatgaggcttacagtttaatttgggggcattataca 429

                                                                       
Query: 65  agtctgcccagtactgatgggagaagaaacagtgggttcagtgtcctgggtgacactgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agtctgcccagtactgatgggagaagaaacagtgggttcagtgtcctgggtgacactgaa 369

                                                                       
Query: 125 aagcaggtagacttcagtttttgtaataaagttctcaagaatctacctggatagagaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aagcaggtagacttcagtttttgtaataaagttctcaagaatctacctggatagagaaga 309

                                                                       
Query: 185 gcaatggcttcctaaagtcctatccttataccaggggcattgtgggagtttggtgttgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatggcttcctaaagtcctatccttataccaggggcattgtgggagtttggtgttgag 249

                                                                       
Query: 245 tgggtgggtgagagcgctcctagaccaacaactgacagccattgctgagttctctgtttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgggtgggtgagagcgctcctagaccaacaactgacagccattgctgagttctctgtttc 189

                                                                       
Query: 305 cccatgtgtaaaatgtgtgcaatgacaagctgtcctcaagggattctagaaaattctaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cccatgtgtaaaatgtgtgcaatgacaagctgtcctcaagggattctagaaaattctaag 129

                                                                       
Query: 365 gaaagactgtatgaaaacaacacagaactgcagcacacaatagtccccaatgtgtggtgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gaaagactgtatgaaaacaacacagaactgcagcacacaatagtccccaatgtgtggtgc 69

                                                                       
Query: 425 agataattatatttttaaataacactgctaattgtctatttcaagtttcattactagtat 484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  ggataattatatttttaaataacactgctaattgtctatttcaagtttcattactagtat 9

                   
Query: 485 aaagtatg 492
           ||||||||
Sbjct: 8   aaagtatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_f17.g1 MSMg01no519_f17.g1 CHROMAT_FILE:
MSMg01no519_f17.g1 PHD_FILE: MSMg01no519_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:03 2005
         (667 letters)



>mm_chr2_145207704_145208770
          Length = 1067

 Score = 1251 bits (647), Expect = 0.0
 Identities = 659/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   atgcttaacaggtagggaaagagagaaaatgggggatcgggtgacaagggaaattagacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atgcttaacaggtagggaaagagagaaaatgggggatcgggtgacaagggaaattagacc 264

                                                                       
Query: 65  aagaaagcatgcatataatttctgtccctgaatcactggccaaaactgaactacctcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 aagaaagcatgcatataatttctgtccctgaatcactggccaaaactgaactaccacact 324

                                                                       
Query: 125 aaacaccacaagcttaatgacttcaatatctagtatgtagattttgctgaaatcacggct 184
           ||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacaccatgagcttagtgacttcaatatctagtatgtagattttgctgaaatcacggct 384

                                                                       
Query: 185 aattaactctgacttaactgtttgagagctgaaatagggtcacaaaacgttgacatcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattaactctgacttaactgtttgagagctgaaatagggtcacaaaacgttgacatcctg 444

                                                                       
Query: 245 aaatgagctatgtcttaaaaaggtgagatttggtggcaatgaatataaacccgtgacctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatgagctatgtcttaaaaaggtgagatttggtggcaatgaatataaacccgtgacctt 504

                                                                       
Query: 305 aggtgagggggagcctttttcaggtgcatgggatgaagagatgtcttaagagccctgtga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggtgagggggagcctttttcaggtgcatgggatgaagagatgtcttaagagccctgtga 564

                                                                       
Query: 365 tttggggtttccttaggtagtgtgcttatgggctctcatatcagcatagtttgctaatcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttggggtttccttaggtagtgtgcttatgggctctcatatcagcatagtttgctaatcc 624

                                                                       
Query: 425 tgaggcaatagtgagttcgactaggcctcacccaccactcaggagttctgagcttgtgta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgaggcaatagtgagttcgactaggcctcacccaccactcaggagttctgagcttgtgta 684

                                                                       
Query: 485 caggtcaccaatgactgactcaaatgtgaaccttaccatatagcagtataacattcaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caggtcaccaatgactgactcaaatgtgaaccttaccatatagcagtataacattcaaaa 744

                                                                       
Query: 545 gtcggttgcctctttccacagggaggcactacttgtatcagtcttcccaggaagctgcca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtcggttgcctctttccacagggaggcactacttgtatcagtcttcccaggaagctgcca 804

                                                                       
Query: 605 aggaattaatgagataatctctgtgtgttagtcagctttgcactgctataacagaatacc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggaattaatgagataatctctgtgtgttagtcagctttgcactgctataacagaatacc 864

              
Query: 665 aca 667
           |||
Sbjct: 865 aca 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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