Query= MSMg01no519_i18.b1 MSMg01no519_i18.b1 CHROMAT_FILE:
MSMg01no519_i18.b1 PHD_FILE: MSMg01no519_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:17 2005
(615 letters)
>mm_chr2_103717428_103718441
Length = 1014
Score = 1166 bits (603), Expect = 0.0
Identities = 609/611 (99%), Gaps = 1/611 (0%)
Strand = Plus / Minus
Query: 5 gaattccagtgcttacatggtggtttacaaccatctgtaactgcagttccaggggtactc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gaattccagtgcctacatggtggtttacaaccatctgtaactgcagttccaggggtactc 693
Query: 65 tgacgccctgttctggcctctacaggccttgcataaatgcagtacacagacatcagggaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tgacgccctgttctggcctctacaggccttgcataaatgcagtacacagacatcagggaa 633
Query: 125 accactgcgggtaggatagtcagcaagggtcgcactgaagaaagaacccaaacctaagga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 accactgcgggtaggatagtcagcaagggtcgcactgaagaaagaacccaaacctaagga 573
Query: 185 taagaatagccaccaagtactctgtgcttggggtttagggacctgtgaggcagagcactg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 taagaatagccaccaagtactctgtgcttggggtttagggacctgtgaggcagagcactg 513
Query: 245 aggcaggaaggggtctccatgaccaagcactgtttcaagtgaaaaggaaaggcgaggttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aggcaggaaggggtctccatgaccaagcactgtttcaagtgaaaaggaaaggcgaggttc 453
Query: 305 ctgtggtgaggaacgtggcttttgttctaaaatcaacagtaagcagctaaaaacaaacaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctgtggtgaggaacgtggcttttgttctaaaatcaacagtaagcagctaaaaacaaacaa 393
Query: 365 acaaaagaaaaaaaacccttaatcaaggatgtcatgaactgttttgaaagattgccttgg 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 acaaaagaaaaaaa-cccttaatcaaggatgtcatgaactgttttgaaagattgccttgg 334
Query: 425 ctgtacctcataccacatgtaacagctcattcaagattggttatagaccaaattataagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctgtacctcataccacatgtaacagctcattcaagattggttatagaccaaattataagg 274
Query: 485 gccaaaactataaggcactcagaagaaaataaacaaattgatctttatggcctttggctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gccaaaactataaggcactcagaagaaaataaacaaattgatctttatggcctttggctt 214
Query: 545 aggaaatggtttatcaattatgactcctgaagaaggagaaaaagaagaagaggaagaggg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aggaaatggtttatcaattatgactcctgaagaaggagaaaaagaagaagaggaagaggg 154
Query: 605 agaaggggaga 615
|||||||||||
Sbjct: 153 agaaggggaga 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1014
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1004
Effective search space: 607420
Effective search space used: 607420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_i18.g1 MSMg01no519_i18.g1 CHROMAT_FILE:
MSMg01no519_i18.g1 PHD_FILE: MSMg01no519_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:17 2005
(541 letters)
>mm_chr2_103542877_103543817
Length = 941
Score = 1031 bits (533), Expect = 0.0
Identities = 538/541 (99%), Gaps = 3/541 (0%)
Strand = Plus / Plus
Query: 1 agggccagtctggactacaaagtgagctcctgtcacaataaaactgaacgctaagcatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggccagtctggactacaaagtgagctcctgtcacaataaaactgaacgctaagcatct 260
Query: 61 agttcattggtagagtatttgcctaacatgtgcaaggcccctggttcagtttccagcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcattggtagagtatttgcctaacatgtgcaaggcccctggttcagtttccagcacc 320
Query: 121 aaaagaaagaggaggaggaggaagaggaagaggaagaagaagaagaggaggaggaggagg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 aaaagaaagaggaggaggaggaagaggaagaggaagaagaagaa---gaggaggaggagg 377
Query: 181 gcaaacacagaaaacaaagaaagagcacattgatgagaagtaccaagaagcaaaatgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcaaacacagaaaacaaagaaagagcacattgatgagaagtaccaagaagcaaaatgaag 437
Query: 241 gggaagagggcaggaaatactggggtgaaccctgatttacagaagaaactatgaaggcgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gggaagagggcaggaaatactggggtgaaccctgatttacagaagaaactatgaaggcgc 497
Query: 301 ctgcacagtcagaagactgcagcgcacacccgctgtggaatgtttgggtgactctgtttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgcacagtcagaagactgcagcgcacacccgctgtggaatgtttgggtgactctgtttg 557
Query: 361 atcagttactatgtcccaaatgatactgtgtggtttggaagcctatccaaaagcctgggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atcagttactatgtcccaaatgatactgtgtggtttggaagcctatccaaaagcctgggg 617
Query: 421 acagccaggctgccatggagggtcacggcccgtgtcttacgccatgacagtgcagcccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acagccaggctgccatggagggtcacggcccgtgtcttacgccatgacagtgcagcccag 677
Query: 481 agactggagcagcagatgaagcgtgaggccaggagtgctttgtggggctgaaactgagcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agactggagcagcagatgaagcgtgaggccaggagtgctttgtggggctgaaactgagcc 737
Query: 541 t 541
|
Sbjct: 738 t 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
