XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTCTCT
TGCCCTAGCCTATCTTAATTTTCAAGTTCCAGGCTACTGAGAGACCTGCT
AAAAACAACAAAAGGTGGAAAGCACCCGGACAGCTGATGTTATCAGGATG
TCTTCTGGCCTGCACAGGGACCCTTGCACATACACAGGTACACACATATA
TACACACATAACTGGAGGACAATAGCTTCTATTTAATACCATTCACACTA
CAGATGTGATGTGCGTCTGAATCTAACCTGCATTTTAAGCATGTTCTTGC
GTCTTCAGCTGAGAGATCAACAAACCATGACATGTTAGTCAGCTTTGACC
TGTGCCTGTTTTTGTAGGTGAAGTTCATTGGATGTCTGCATGCCTTCTCA
CTTAGGCATGGCTGAGCAGCTGTGACAGAGCCACAAAGTCTGCAACATCC
ACTATCTGGTCTTGTATAGAAAATGCCTGCTGCTTCCGTCTCAGTCGCTA
TAATCAGTAAAATGATAAGTTAACTGGTGAAACAAAAGCACTCATCTGTA
ATGTTTGCTTATCTCAAGGCCGGTGCTAGTTACCACCATCACGGCCAAGT
TCAAGTACTGACTTGTGAAATGAAGGGCTGGAAAGAGCTTTCTGACATTT
AACAGTCTCACTGTGCAAGTGCAATACATCTAAATCAATGCAGAGTATAG
ATTATAATGTAGTAAATACGGGCCTGGAGAGATGGCTCACTGGTTAAGAG
CACT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTACCCACTTGAGTTTATGGGCTGGGAAGTCCTTTA
CTGCTTTATTATAACCCACCTGGCTCCTAGCTCAGTTTTCACTTATCAAT
AAGCCTCAGTTTCCCAATCTATCAACCATTTAACAAAAGAGTCCACAAAG
TCAATGAGTTCCTTGTGCTAGATACCCGGGGAAGATGGAGATACCCTGGG
AAGATGGAGATACCCTGGGAAGATGGAGATACCCGGGGAAGATGGAGATA
CCCTGGGAAGATGGAGATACCCGGGGAAGATGGAGATACCCTGGGAAGAT
GGAGATACCCGGGGAAGATGGAGATAACTCTGGGAAGATGGAGATACCCT
GGGAAGATAGAGATACCCTGGGAAGATAGAGATACCCTGGGAAGATGGAG
ATACCCGGGGAAGATGGAGATACCCTGGGAAGATGGAGATACCCTGGGAA
GATGGAGATAACTCTGGGAAGATGGAGATACCCTGGGAAGATGGAGATAC
CCTGGGAAGATGGAGATACCCTGGGAAAATGGAGATACCCTGGGAAAATG
GAGATACTCTGGGAAGAAGGAGTTACCCTGGANAGATGGAGATGCCCTGG
GAAGATGGAGAAAGATGCAGCTGATCCTCATGAGACTATTGGAGGTACCT
TCAGACACTAGCTATCAATTATTTCATAGGTAATTTCATAGGTAAATCAT
TGCAAGTTGGAAAA

Query= MSMg01no519_o17.b1 MSMg01no519_o17.b1 CHROMAT_FILE:
MSMg01no519_o17.b1 PHD_FILE: MSMg01no519_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:47 2005
         (675 letters)



>mm_chr2_105199861_105200935
          Length = 1075

 Score = 1266 bits (655), Expect = 0.0
 Identities = 664/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctcttgccctagcctatcttaattttcaagttccaggctactgagagacct 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctccagccctagcctatcttaattttcaagttccaggctactgagagacct 264

                                                                       
Query: 65  gctaaaaacaacaaaaggtggaaagcacccggacagctgatgttatcaggatgtcttctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctaaaaacaacaaaaggtggaaagcacccggacagctgatgttatcaggatgtcttctg 324

                                                                       
Query: 125 gcctgcacagggacccttgcacatacacaggtacacacatatatacacacataactggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcctgcacagggacccttgcacatacacaggtacacacatatatacacacataactggag 384

                                                                       
Query: 185 gacaatagcttctatttaataccattcacactacagatgtgatgtgcgtctgaatctaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacaatagcttctatttaataccattcacactacagatgtgatgtgcgtctgaatctaac 444

                                                                       
Query: 245 ctgcattttaagcatgttcttgcgtcttcagctgagagatcaacaaaccatgacatgtta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgcattttaagcatgttcttgcgtcttcagctgagagatcaacaaaccatgacatgtta 504

                                                                       
Query: 305 gtcagctttgacctgtgcctgtttttgtaggtgaagttcattggatgtctgcatgccttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcagctttgacctgtgcctgtttttgtaggtgaagttcattggatgtctgcatgccttc 564

                                                                       
Query: 365 tcacttaggcatggctgagcagctgtgacagagccacaaagtctgcaacatccactatct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcacttaggcatggctgagcagctgtgacagagccacaaagtctgcaacatccactatct 624

                                                                       
Query: 425 ggtcttgtatagaaaatgcctgctgcttccgtctcagtcgctataatcagtaaaatgata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtcttgtatagaaaatgcctgctgcttccgtctcagtcgctataatcagtaaaatgata 684

                                                                       
Query: 485 agttaactggtgaaacaaaagcactcatctgtaatgtttgcttatctcaaggccggtgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 685 agttaactggtgaaacaaaagcactcatctgtaatgtttgcttatctcaaggctggtgct 744

                                                                       
Query: 545 agttaccaccatcacggccaagttcaagtactgacttgtgaaatgaagggctggaaagag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agttaccaccatcacggccaagttcaagtactgacttgtgaaatgaagggctggaaagag 804

                                                                       
Query: 605 ctttctgacatttaacagtctcactgtgcaagtgcaatacatctaaatcaatgcagagta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctttctgacatttaacagtctcactgtgcaagtgcaatacatctaaatcaatgcagagta 864

                  
Query: 665 tagatta 671
           |||||||
Sbjct: 865 tagatta 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)