BAC Information

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BAC

Clone NameMSMg01-519P12
Chromosome2 (Build37)
Map Location 96,453,696 - 96,454,336
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519P12.T7 (MSMg01no519_p12.b1)MSMg01-519P12.TJ (MSMg01no519_p12.g1)
ACCAG591114AG591115
length740746
length of high quality
(start - end)
702 (39 - 740)641 (68 - 708)
definitionCHROMAT_FILE: MSMg01no519_p12.b1 PHD_FILE: MSMg01no519_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:51 2005CHROMAT_FILE: MSMg01no519_p12.g1 PHD_FILE: MSMg01no519_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TGATGATATTTGTATCTCATTTTTAATTAGGGAATTATTTTCTTAATGTC
CAGTTCATGGATTTATTTTGACTTCTCTAGTTATTCATCTATTAAGTGCA
GAATTGGTAAAAATATTTCTCCATTTTGTAGCCTGCCACTTTATCTGAAT
AATGGTATCCTTTACTATAAAGCAACTTTCTTCTAAGTTTCTTGAAATCA
CATTTAATAATTGCTCTTTATTCCTATGCTACAAGCTTCCTCATGCAGTA
GATGGGAAGAAATACAGAGACCCACAGCTAGAAAATGTGCAGAGAGCAAG
AGTCCTTGGAACACTCAGTCCTGAATTGGATACCTATATCAAATCCCTCA
CCCTGGACTCAGAAATATCTTCAGAAGAGGAGGTGGAAGGAATCCAGAGT
GGATAAAGAACATCAAAGAACTAAGGCCTTCTAAGCATCCTAGTCCTGGT
GTACAAGTGAACTGTGATTGTGGCAGCATTCACAGGGGCTGCACAGGTCT
GTGCCAGATGGGGTCCCAGAACTGAAAGACTTAAACACAAATCCTCTGCC
CTAGGTCAGAAGCTGTTTCAAATTGATAACCACTCTCAAATGAAACTTAA
TTTTCTCCAACAGGGTTTCACTTGGGACACAAACCACACTTAAGGGCAGG
CCCCATGCCCAGCTGTAGATATCCAATACAAAACTAACTA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCTCCAAATCTAAGTCCTGCTGCTAATAAACA
ATCAATAACTTCAGTCAGACATTTAACTCTTCTAATCTTTAGTGTACTGG
AGAGCCAGGGATAGTGTTACTAATATCCATCACAGAACACTATATGGACA
GATTCTGGTGATATCTATAAAATGCTGATGAGAAATAAGCCTCCCACTCA
TGCTGGCTTGCCTTTACTCCCTGGCTTGATTTGGACCATGTTCAATCAAT
TCAGTTAGACAAATATTGATTGCTTCCCCAGAGCTATGTTTGACTCTAGG
AAAACAATAGCAATTCTGAGTCCTTGCATCTTTTCGGTGATTATTTAGTT
CTGCCTGACTGTACTCTTATCTGTTACCCAATCTGTTTCAGTGTCATATA
TGGAGCTAGATTAATGGAATTAACCAGGAGAAACAGGGGGAGTCTAAAGA
AAACGACTATTTTCAGCAGAGGTCTATAGGCATATCTGAGTAAGTGAATA
TCAAACCTGAAATCCTCTTTTTTTCAATTCACTGAGGTGTATTGACAGTT
CTGAGGTGCTCTGTGGTTGGGAATAGAGGGTTATGAGGAGCCCAGAAGCT
CAAAAGTTTGCAGGGGAGCTTCAGACAGATGTGGCAGACTTCACTCACTC
CCTTCAAGGGCTCAGGGACATTAATATAAAATCACAGAAAGTGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_p12.g1 MSMg01no519_p12.g1 CHROMAT_FILE:
MSMg01no519_p12.g1 PHD_FILE: MSMg01no519_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:51 2005
         (641 letters)



>mm_chr2_96453496_96454536
          Length = 1041

 Score = 1216 bits (629), Expect = 0.0
 Identities = 638/641 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctccaaatctaagtcctgctgctaataaacaatcaataacttcagtcagacatttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctccaaatctaagtcctgctgctaataaacaatcaataacttcagtcagacatttaac 260

                                                                       
Query: 61  tcttctaatctttagtgtactggagagccagggatagtgttactaatatccatcacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctaatctttagtgtactggagagccagggatagtgttactaatatccatcacagaa 320

                                                                       
Query: 121 cactatatggacagattctggtgatatctataaaatgctgatgagaaataagcctcccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactatatggacagattctggtgatatctataaaatgctgatgagaaataagcctcccac 380

                                                                       
Query: 181 tcatgctggcttgcctttactccctggcttgatttggaccatgttcaatcaattcagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgctggcttgcctttactccctggcttgatttggaccatgttcaatcaattcagtta 440

                                                                       
Query: 241 gacaaatattgattgcttccccagagctatgtttgactctaggaaaacaatagcaattct 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacaaatattgattgcttccctagagctatgtttgactctaggaaaacaatagcaattct 500

                                                                       
Query: 301 gagtccttgcatcttttcggtgattatttagttctgcctgactgtactcttatctgttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtccttgcatcttttcggtgattatttagttctgcctgactgtactcttatctgttac 560

                                                                       
Query: 361 ccaatctgtttcagtgtcatatatggagctagattaatggaattaaccaggagaaacagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaatctgtttcagtgtcatatatggagctagattaatggaattaaccaggagaaacagg 620

                                                                       
Query: 421 gggagtctaaagaaaacgactattttcagcagaggtctataggcatatctgagtaagtga 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggagtctaaagaaaatgactattttcagcagaggtctataggcatatctgagtaagtga 680

                                                                       
Query: 481 atatcaaacctgaaatcctctttttttcaattcactgaggtgtattgacagttctgaggt 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatcaaccctgaaatcctctttttttcaattcactgaggtgtattgacagttctgaggt 740

                                                                       
Query: 541 gctctgtggttgggaatagagggttatgaggagcccagaagctcaaaagtttgcagggga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctctgtggttgggaatagagggttatgaggagcccagaagctcaaaagtttgcagggga 800

                                                    
Query: 601 gcttcagacagatgtggcagacttcactcactcccttcaag 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcttcagacagatgtggcagacttcactcactcccttcaag 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)