GCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTTTCCTATTTGAATTAAGCCATTCAATGTGGATAATTCAT
GCCTAAGGCACCTTTCTAGGTACTGAATGGGTATCTTGTTTCCAAAGATA
TTTATTTCTTACCTTGCATAGAGGAAGCTCACACCATAATGTTGTTGCAT
GACAACAAAATATCAGTTTTTACTAACTTTTTAAGTACAATGATATTCCA
ATGTGTGAGAAAACGATTTACCACTATTTTATACAAGTTTTTTCTACATT
AATACTGCTGTGTATATTAATATAATCCTGAAGATCATATTTAATTCAGG
AAAAATGAAGAGAAAATTAAGATAAATACCATGGTCCCTCACTAAATATT
TGTTGGCTTTTCTGTTTTCAATCAAAAGTCAGGAATATGAAAACATCTAT
CTAGATGCCAGGTTTCTAATTTCTGACATTTGTCTCTTAGACTGTATATG
CCAAATATTGTACACCTCAACTGTTTGTATACACACACACACACACACAC
ACACTTCTTCCATGTGGAATTTACCTTTCTGCTATATACACATTTGAAAG
TCAATGAGTGGTATTTTAATTCTTTGAAATGTGGCAGCTTAGTCTATTTT
TTATGTCCTATAAATGAATCTCATTAAATTTCTGAAATGGTATATAGTAT
TTACATGCATTTAAATTCACTATAAATATTTACAGAACTTCAAGGTGATT
GCCAGTAATAT

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTATCTCAGTACCCCATTTT
TTTCATTGTGTTGTTTAGTTTTTGGTGTCTAGCCTCTTGATTTCTGTATA
TATTTTAGATATTAGCCCTCTGTCGGATGTAGGGTTGGTGAAATTCTTTT
CCAAGTCTGTAGGTGGTCATTTCTTCCTATTGACGGTGTCCCTTGCCTTA
CAGAAGCTTTTTAGTTTCATGAGGTACCATTTATTAATTGTTGAGCTTAG
TTCCTGAACCATTGATCTTCTGTTCAGGAAGTTGTCTCCTATACCAATGT
GTTCAAGGCTATTCTCCTCTTTCTTTCCCTTCTTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTNCCTCCCTCCC
TCCTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTT
CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTCTTTTTTTCAAACATAATTTCTCTGTCTACCCTTGNCTGTCCTGGAAA
TCACTCAAAAAACCANTCTGGCCTTTGAACTCAAAAATTCACTGGCTCTG
CCTCTGCCTCCA

Query= MSMg01no520_m03.b1 MSMg01no520_m03.b1 CHROMAT_FILE:
MSMg01no520_m03.b1 PHD_FILE: MSMg01no520_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:53 2005
         (714 letters)



>mm_chr2_8818001_8819114
          Length = 1114

 Score = 1232 bits (637), Expect = 0.0
 Identities = 664/683 (97%), Gaps = 16/683 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttttcctatttgaattaagccattcaatgtggataattcatgcctaaggcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaattcttttttcctatttgaattaagccattcaatgtggataattcatgcctaaggcac 624

                                                                       
Query: 65  ctttctaggtactgaatgggtatcttgtttccaaagatatttatttcttaccttgcatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctttctaggtactgaatgggtatcttgtttccaaagatatttatttcttaccttgcatag 564

                                                                       
Query: 125 aggaagctcacaccataatgttgttgcatgacaacaaaatatcagtttttactaactttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aggaagctcacaccataatgttgttgcatgacaacaaaatatcagtttttactaactttt 504

                                                                       
Query: 185 taagtacaatgatattccaatgtgtgagaaaacgatttaccactattttatacaagtttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taagtacaatgatattccaatgtgtgagaaaacgatttaccactattttatacaagtttt 444

                                                                       
Query: 245 ttctacattaatactgctgtgtatattaatataatcctgaagatcatatttaattcagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 443 ttctacattaatactgctgtgtatattaatataatcctgaagatcatttttaattcagga 384

                                                                       
Query: 305 aaaatgaagagaaaattaagataaataccatggtccctcactaaatatttgttggctttt 364
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 383 aaaatgaagagaaaattaagataaatactatggtccctcactgaatatttgttggctttt 324

                                                                       
Query: 365 ctgttttcaatcaaaagtcaggaatatgaaaacatctatctagatgccaggtttctaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgttttcaatcaaaagtcaggaatatgaaaacatctatctagatgccaggtttctaatt 264

                                                                       
Query: 425 tctgacatttgtctcttagactgtatatgccaaatattgtacacctcaactgtttgtata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctgacatttgtctcttagactgtatatgccaaatattgtacacctcaactgtttgtata 204

                                                                       
Query: 485 cacacacac----------------acacacacacacacttcttccatgtggaatttacc 528
           |||||||||                |||||||||||||||||||||||||||||||||||
Sbjct: 203 cacacacacacacacacacacacatacacacacacacacttcttccatgtggaatttacc 144

                                                                       
Query: 529 tttctgctatatacacatttgaaagtcaatgagtggtattttaattctttgaaatgtggc 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tttctgctatatacacatttgaaagtcaatgagtggtattttaattctttgaaatgtggc 84

                                                                       
Query: 589 agcttagtctattttttatgtcctataaatgaatctcattaaatttctgaaatggtatat 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  agcttagtctattttttatgtcctataaatgaatctcattaaatttctgaaatggtatat 24

                                  
Query: 649 agtatttacatgcatttaaattc 671
           |||||||||||||||||||||||
Sbjct: 23  agtatttacatgcatttaaattc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)