Query= MSMg01no520_n18.b1 MSMg01no520_n18.b1 CHROMAT_FILE:
MSMg01no520_n18.b1 PHD_FILE: MSMg01no520_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:01 2005
(632 letters)
>mm_chr2_16651122_16652152
Length = 1031
Score = 1183 bits (612), Expect = 0.0
Identities = 627/632 (99%), Gaps = 1/632 (0%)
Strand = Plus / Minus
Query: 1 ggtttcccatgtatcctgcagtgaattcaaacacaattctgcaagggcacatcccatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ggtttcccatgtatcctgcagtgaattcaaacacaattctgcaagggcacatcccatttg 772
Query: 61 tccctctagtatttcaatattgtctggtgttggaagaggaatgctcttacacagtcctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tccctctagtatttcaatattgtctggtgttggaagaggaatgctcttacacagtcctac 712
Query: 121 cttgaaagatgcaattaaaaataggaaatcctcttgggctaaaaagaagaactggttagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 cttgaaagatgcaattaaaaataggaaatcctcttgggctaaaaagaagaactggttagg 652
Query: 181 ccaattgtatctagtggtttcaaggctccttaccctagcttcctagacactcccctttgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 651 ccaattgtatctagtggtttcaaggctccttaccctagcttcctagacactcccttttgt 592
Query: 241 ctatggcccctgcacataatccatgttccttctggcactggagctaaatctatattctgg 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctatggcccctgtacataatccatgttccttctggcactggagctaaatctatattctgg 532
Query: 301 ataggatagaggagtatcaaatgaaccttactgtggataaatgggtatgcatttatacag 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ataggatagaggagtgtcaaatgaaccttactgtggataaatgggtatgcatttatacag 472
Query: 361 aaaagaataactgtattcatgttatacaaaaatggcagtaccatataatatcttattttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaaagaataactgtattcatgttatacaaaaatggcagtaccatataatatcttattttt 412
Query: 421 atatctgtcattttgcagtgtaagttgtattttctgtatcttttatgagccttttgtgga 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atatctgtcattttgcagtgt-agttgtattttctgtatcttttatgagccttttgtgga 353
Query: 481 cagacctactttattatattatatacataaccaaatttcaattgataatttattaagcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cagacctactttattatattatatacataaccaaatttcaattgataatttattaagcca 293
Query: 541 agtcttccctctccagcgtaggctgggtttccttctaggactgggagaacagctggctaa 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 292 agtcttccctctccagcgtaggctgggtttcctcctaggactgggagaacagctggctaa 233
Query: 601 catattttgtataacagcactggaaagcatgg 632
||||||||||||||||||||||||||||||||
Sbjct: 232 catattttgtataacagcactggaaagcatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1031
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1021
Effective search space: 635062
Effective search space used: 635062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_n18.g1 MSMg01no520_n18.g1 CHROMAT_FILE:
MSMg01no520_n18.g1 PHD_FILE: MSMg01no520_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:01 2005
(620 letters)
>mm_chr2_16522058_16523077
Length = 1020
Score = 1054 bits (545), Expect = 0.0
Identities = 602/629 (95%), Gaps = 14/629 (2%)
Strand = Plus / Plus
Query: 1 tattatcagctgtgtggcaattgccattttgtatgttgtccagttttagttattcaattt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 197 tattatcagctgtgtggcaattgccattttgtatgttgtccagttttagtaattcaattt 256
Query: 61 ggactgagagttcaaatcattcattggccaacagcaatgacttatgactgttccaatatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggactgagagttcaaatcattcattggccaacagcaatgacttatgactgttccaatatc 316
Query: 121 atttgctctaaaatgctgaccactaggaaagttgggctggagagtaataatgttgtgtaa 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 317 atttgctctaaaatgctgaccactaggaaagttgggctggggagtaataatgttgtgtaa 376
Query: 181 ttctggggacacagtgcctcatgagaatgcgatggaaaggggtaccacagcatgttaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 377 ttctggggacacagtgcctcatgagaatgcgatggaaaggggtaccacaacatgttaaag 436
Query: 241 agcttggggtgatattgctatacttacttacgttcttccaaagcacgtggatggctgctt 300
|| |||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct: 437 agtttggggtgatgttgctatacttactcacattcttccaaagcatgtggatggctgctt 496
Query: 301 tctgtgcacaaaatgaatgtgagctgatattgttatgacttaagtcagcataggaagaag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 497 tctgtgcacaaaatgaatgtgagctgatattgttatgacttaagtcagcataagaagaag 556
Query: 361 aagggaaaaaaaaacaatcatggtgatttcaaatattcaagcccttccaactgaatgcat 420
|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 557 aagggaaaaaaa-----tcatggtgatttcaaatattcaagcccttgcaaccgaatgcat 611
Query: 421 ttcagtaacatttttatgcaaaattccagggaggagtaagaatg---------gtgtggt 471
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 612 ttcagtaacatttttatgcaaaattccagggaggagtaagaatgacggacagggtgtggt 671
Query: 472 tctgtttttaacattacattcgagagtcccagagatcattgagataccacatgtgcagtt 531
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tctgtttttaacattacatttgagagtcccagagatcattgagataccacatgtgcagtt 731
Query: 532 cagatttatgaacctaaagttaagagtagaagtaggagaaataatttgtacaaatttaac 591
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 732 cagatttatgaacctaaagttaagagtagaagtaggagaaataatttgtaaaaatttaac 791
Query: 592 aagtttaaattctttaaaagagtaacata 620
|||||||||||||||||||||||||||||
Sbjct: 792 aagtttaaattctttaaaagagtaacata 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
