Query= MSMg01no521_n04.b1 MSMg01no521_n04.b1 CHROMAT_FILE:
MSMg01no521_n04.b1 PHD_FILE: MSMg01no521_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:16 2005
(558 letters)
>mm_chr2_50312436_50313389
Length = 954
Score = 824 bits (426), Expect = 0.0
Identities = 444/452 (98%), Gaps = 4/452 (0%)
Strand = Plus / Minus
Query: 107 tccaaacaccccaggtccacagagaaggagaattagatttactcaggaaggtaggcctcg 166
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tccaaacaccccaggtccacagagaaggagaattagatttactcaggaaggtaggcctca 695
Query: 167 tcctcccctgatcactgtccactttctgcctccaacagtacagagcagtggaagagacca 226
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tcctcccccgatcactgtccactttctgcctccaacagtacagagcagtggaagagacca 635
Query: 227 agctgagaatctccacaaaaacagaaaactggatgctacccttgtcagagtttgtgttca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agctgagaatctccacaaaaacagaaaactggatgctacccttgtcagagtttgtgttca 575
Query: 287 tgcattggccagtagaagaagccaaaggactaaatttttacccatggccaggactgcctc 346
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 574 tgcattggccagtagaagaagccaaagaactaaatttttacccatggccaggactgcctc 515
Query: 347 agacaaaacaaagtgggagggagtcagtagaaagcaaaactaaagctcattggtgtggca 406
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 514 agacaaaacaaagtgggag----tcagtagaaagcaaaactaaagctcattggtgtggca 459
Query: 407 gccttggctacttcccagatgtctctgctttgcttcactgttttccccttgttagacacc 466
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gccttggctacgtcccagatgtctctgctttgcttcactgttttccccttgttagacacc 399
Query: 467 tccactaagtaatgtagtagtcacaagctttgatcatcaacacagaacatgaatttggga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tccactaagtaatgtagtagtcacaagctttgatcatcaacacagaacatgaatttggga 339
Query: 527 aaaaatggcagtctgttgggtatcagctcttc 558
||||||||||||||||||||||||||||||||
Sbjct: 338 aaaaatggcagtctgttgggtatcagctcttc 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 954
Length adjustment: 10
Effective length of query: 548
Effective length of database: 944
Effective search space: 517312
Effective search space used: 517312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_n04.g1 MSMg01no521_n04.g1 CHROMAT_FILE:
MSMg01no521_n04.g1 PHD_FILE: MSMg01no521_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:16 2005
(663 letters)
>mm_chr2_50160622_50161684
Length = 1063
Score = 1272 bits (658), Expect = 0.0
Identities = 661/662 (99%)
Strand = Plus / Plus
Query: 1 atgagcagtaggattaagctcttccatgagcctccattgacactagaagtgtagaccaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagcagtaggattaagctcttccatgagcctccattgacactagaagtgtagaccaca 260
Query: 61 ggtgcaatatgcactatgaacaccagctgtcactgctctacagtttacaaagccaccctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgcaatatgcactatgaacaccagctgtcactgctctacagtttacaaagccaccctg 320
Query: 121 agtggttaccagcgaggagaattgttgttaagaacattttctggatgtgaagcataaagg 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggttaccagggaggagaattgttgttaagaacattttctggatgtgaagcataaagg 380
Query: 181 tctaggacaacatgaattccatttcaaaccattatgtatgaccctgagcttttgttaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaggacaacatgaattccatttcaaaccattatgtatgaccctgagcttttgttaaaa 440
Query: 241 gatctctctgagatgtaaataggctgcacagatgtgtttgttgaatgaggaaaaagtact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctctctgagatgtaaataggctgcacagatgtgtttgttgaatgaggaaaaagtact 500
Query: 301 tgggagatagagcaaacactttcagtttaaaactcaaactggatactacagtctgaaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggagatagagcaaacactttcagtttaaaactcaaactggatactacagtctgaaagg 560
Query: 361 atgcagtgggtatcagggtgcatcatttgatttcctggccttacattacctcatccatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcagtgggtatcagggtgcatcatttgatttcctggccttacattacctcatccatag 620
Query: 421 gtataggctccatgaaatctctcttcctgtgaagattctgagataccataggtactggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtataggctccatgaaatctctcttcctgtgaagattctgagataccataggtactggag 680
Query: 481 ttatggaaacaacaggacttagtcctggcttttgcgtttggcacatactaataattccgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatggaaacaacaggacttagtcctggcttttgcgtttggcacatactaataattccgt 740
Query: 541 aacatccctgagccttggaactctgaagtcagtatgaggataataaatgctaagtgcttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacatccctgagccttggaactctgaagtcagtatgaggataataaatgctaagtgcttt 800
Query: 601 ctcaaagacaaagcatcagatatatgtcaagtatttggattctcaggatgtcatgacttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcaaagacaaagcatcagatatatgtcaagtatttggattctcaggatgtcatgacttt 860
Query: 661 gc 662
||
Sbjct: 861 gc 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
