Query= MSMg01no522_a02.b1 MSMg01no522_a02.b1 CHROMAT_FILE:
MSMg01no522_a02.b1 PHD_FILE: MSMg01no522_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:30 2005
(683 letters)
>mm_chr2_170378677_170379759
Length = 1083
Score = 1147 bits (593), Expect = 0.0
Identities = 656/677 (96%), Gaps = 3/677 (0%)
Strand = Plus / Plus
Query: 8 gaattctgacctgtcagtccaccgcttgtaccagtgcatcactgtacagctggtgtgtat 67
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 208 gaattctgacctgtcagtccaccgcttgtaccagtgcatcactgtgcaggtggtgtgtat 267
Query: 68 ttgccagccaagggacagagccaatcataaggtagagtctgagtcattttcccagattgt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 268 ttgccagccaagggacagagccaatcataaggtagagtctgagtcattttcccagatcgt 327
Query: 128 tgcaaggaggagatagccacctgcaggatggaactagactgcatgttcgggtaagcactg 187
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 328 tgcaaggaggagatagccacctgcaggatgggactagactgcatgttcgggtaagcactg 387
Query: 188 ggccagttctgaggctgaaggcaaatttaaatttt-ccaatttgctttttataccatttt 246
|||||||||||||||||||||||||||| |||||| ||||| |||||||||| |||||||
Sbjct: 388 ggccagttctgaggctgaaggcaaattt-aattttcccaatctgctttttatgccatttt 446
Query: 247 aattacatgcaggtattaagggcaagaagtacaatgaggaatctagcaagacaataaaca 306
|| |||||| | |||||||| || || |||||||||||||||||||||||||||||||||
Sbjct: 447 aactacatggaagtattaagtgcgagcagtacaatgaggaatctagcaagacaataaaca 506
Query: 307 cacagccccatgatcactccagtgatcgctgtttctaaggatgatcaagatatctgagcc 366
||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 507 cacagccacacgatcactccagtga-cgctgtttctaaggatgatcaagctatctgagcc 565
Query: 367 tacttctttgttccaccctaaaaccagattctttcttccttgtccttggccaatgtcagg 426
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tacttctttgttccaccttaaaaccagattctttcttccttgtccttggccaatgtcagg 625
Query: 427 tccctgcctgaacttacttctttgtcatgccctaatgtcagatttcctgccaagtggcac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tccctgcctgaacttacttctttgtcatgccctaatgtcagatttcctgccaagtggcac 685
Query: 487 cccaaaaggctccccacactgtagtttcctttctcactgctgtggcaatcattggccaaa 546
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 686 cccaaaaggctccccacactgtagtttcctttctcactgccgtggcaatcattggccaaa 745
Query: 547 gcaacttaaacctcactaaggtggtgcatgcctctaatcctggcactagagaaactgaca 606
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gcaacttaaagctcactaaggtggtgcatgcctctaatcctggcactagagaaactgaca 805
Query: 607 catctctatgagttcaatactaacctggtctacatagctagttccaggccagccagggct 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 catctctatgagttcaatactaacctggtctacatagctagttccaggccagccagggct 865
Query: 667 gtgtagtgagatgcggt 683
|||||||||||||||||
Sbjct: 866 gtgtagtgagatgcggt 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_a02.g1 MSMg01no522_a02.g1 CHROMAT_FILE:
MSMg01no522_a02.g1 PHD_FILE: MSMg01no522_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:30 2005
(537 letters)
>mm_chr2_170530123_170531059
Length = 937
Score = 692 bits (358), Expect = 0.0
Identities = 404/430 (93%), Gaps = 18/430 (4%)
Strand = Plus / Minus
Query: 108 cttctcctctacaccactcagagaaattttaagcagttccctatacagatattgctttga 167
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 937 cttctcctctacaccactcagagaaattttaagcagttccctattcagatattgctttga 878
Query: 168 gttcatgtatatatatatgtatatgtatatgcatttccttcatacaaaaacacacacatc 227
|||| |||||||||| |||||||||||||||| |||||||||||
Sbjct: 877 gttc------------atgtatatgt------atttccttcatacaaacacacacacatc 836
Query: 228 attctcatacacacatgcatgcacacatatgcaagcacacgcacataaaagcacacacac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 attctcatacacacatgcatgcacacatatgcaagcacacgcacataaaagcacacacac 776
Query: 288 atgcaattacatatttgcaagcacacatgcacaccacagagttatctgcataaaaataca 347
||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 775 atgcaatcacatacatgcaagcacacatgcacaccacagagttatctacataaaaataca 716
Query: 348 ttcatagctttaggtacagtcaggatctctaacaaaatctcagtaaccgactttggtgtg 407
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttcatagctctaggtacagtcaggatctctaacaaaatctcagtaaccgactttggtgtg 656
Query: 408 ataaatgagctgagttgggcatatgaaacacagccagagtttcttaaacctttaaaaata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ataaatgagctgagttgggcatatgaaacacagccagagtttcttaaacctttaaaaata 596
Query: 468 atatagacctaatagcataaaataaatctccatgaaaaatgtcccatgattacgaatctg 527
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 595 atatagacctaatagcataaaataaatctccatgaaaaatatcccatgattacgaatctg 536
Query: 528 aagcctaaca 537
||||||||||
Sbjct: 535 aagcctaaca 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
